PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G239700.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 356aa MW: 38042.1 Da PI: 9.8818

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G239700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.7	1.2e-13	276	326	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L + e+ ++ Sevir.2G239700.1.p 276 RRHRRMIKNRESAARSRARKQAYTMELEAEVQKLKELNQELERKQAEIMEM 326 699************************************998877777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.9E-14	271	335	No hit	No description
SMART	SM00338	6.2E-11	272	337	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.645	274	325	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.86E-23	276	328	No hit	No description
SuperFamily	SSF57959	3.06E-10	276	324	No hit	No description
Pfam	PF00170	7.8E-12	276	327	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	279	294	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MEFKNGGSSS QRRPAVEEGA PLARQGSVYS LTFDEFQSAL GGAAGGGGGG IGRDFGSMNM 60 DELLRNIWNA EETQAMASAS GAGAQPAPLQ RQGSSLTLPR TLSSKTVDEV WRNLVRDEPP 120 QGVDGGGQQQ AHRQSTLGEM TLEEFLVRAG VVRENPAPAA APAPPPMLPP RPVPVAPKST 180 AFLGNFPGAD DAAAAVALGF APIGMGDPAL GNGLMPPRAA GMGGSAMAVQ TAVNQLDSGG 240 KGYSDLLSPT EPLPYSFEGM IRGRRNGGGV EKVVERRHRR MIKNRESAAR SRARKQAYTM 300 ELEAEVQKLK ELNQELERKQ AEIMEMQKNE LPEMLKDPFR RKKRVCLRRT LTGPW*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MEFKNGGSSS QRRPAVEEGA PLARQGSVYS LTFDEFQSAL GGAAGGGGGG IGRDFGSMNM  60
DELLRNIWNA EETQAMASAS GAGAQPAPLQ RQGSSLTLPR TLSSKTVDEV WRNLVRDEPP  120
QGVDGGGQQQ AHRQSTLGEM TLEEFLVRAG VVRENPAPAA APAPPPMLPP RPVPVAPKST  180
AFLGNFPGAD DAAAAVALGF APIGMGDPAL GNGLMPPRAA GMGGSAMAVQ TAVNQLDSGG  240
KGYSDLLSPT EPLPYSFEGM IRGRRNGGGV EKVVERRHRR MIKNRESAAR SRARKQAYTM  300
ELEAEVQKLK ELNQELERKQ AEIMEMQKNE LPEMLKDPFR RKKRVCLRRT LTGPW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.2G239700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957010.1	0.0	bZIP transcription factor TRAB1
Swissprot	Q6ZDF3	1e-120	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	K3ZUL9	0.0	K3ZUL9_SETIT; Uncharacterized protein
STRING	Si030114m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19290.1	1e-40	ABRE binding factor 4

Link Out ? help Back to Top
Phytozome	Sevir.2G239700.1.p

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]