PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G238600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 524aa    MW: 56231.9 Da    PI: 8.136
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G238600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.69e-31101402127
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratk..sgyWkatgkd 89 
                         p GfrF+P+deelv +yL ++++g+++  ++ + e+ +y+++P +L +++k+ +++ewyf s+r++ y +g r+ r+t+  +g+Wka+  +
  Sevir.2G238600.1.p  10 PIGFRFKPKDEELVEYYLLPRLQGRPTVPNDSVIEASVYDYHPDRLTNEYKSgGQEEWYFLSSRARMYGNGVRPARKTRdgRGRWKASTAT 100
                         89************************7777889999**********9655552667********************99955677******* PP

                 NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                         kev ++   +  + +k +L +++g+ +k  +t+W+m e +
  Sevir.2G238600.1.p 101 KEVAEEvvCNGIKFCKSVLNYFEGNPKKEARTKWIMLELT 140
                         ****988877789***********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-357168IPR003441NAC domain
PROSITE profilePS5100537.7279168IPR003441NAC domain
PfamPF023655.2E-1610139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MEGGGEKKYP IGFRFKPKDE ELVEYYLLPR LQGRPTVPND SVIEASVYDY HPDRLTNEYK  60
SGGQEEWYFL SSRARMYGNG VRPARKTRDG RGRWKASTAT KEVAEEVVCN GIKFCKSVLN  120
YFEGNPKKEA RTKWIMLELT VPEYEIKLDK PGAKNMLDEY VMCKIYVSPQ HKKKGDADDD  180
EEGTSSAFEE EEEEACSSTP HGQGTAESMH ADKQAGKRPM VEQPPQRGSF APARKQARQG  240
SLSTGSATQA SYSSTSNAAS STEAYCGGLG QLTGAHCGLQ FQAPPMPRPA GAYNGQAPAK  300
PPAGACGGWG LVQLPTPTPV LYQPFADPTD DDPFGQMAAT MTRPTTPANQ AARLPGFPGS  360
QPPRHPGTGF RPQVSLQCCY DQNYRPVQVQ QPPPGNASSS QLQGLPAFLP QQQMLQPFLN  420
GGANRRAGAA AVPRGPSYNG YPYQRTSLAP TADGHGGAAN EKNGAARFNV NAEQFFVDLA  480
TINPSLAGGC TQPAPVGLVK PPAPAAARPV ESPAPRGGRC CES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-17516611166Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G238600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959506.10.0NAC domain-containing protein 71
TrEMBLK4A1Y50.0K4A1Y5_SETIT; Uncharacterized protein
STRINGSi032881m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143612024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.14e-23NAC-like, activated by AP3/PI