PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G232300.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 335aa MW: 38659.9 Da PI: 6.5246

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G232300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.4	8.7e-22	81	186	2	91
FAR1 2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgk 75 f+++Y+ + F+v++++ +++ krn+e++k++++C ++gk+ ++k++ ++++r+t+++ +t+Ck+ ++vk+ g Sevir.2G232300.1.p 81 FFSFYGFLARFEVVVAHVTRTtskKRNNEVYKQEMKCHRYGKPLKNKEDdviedtlvveventDKEKRKTNVQVKTNCKCVMVVKEI-AGI 170 9************99988888899***************9999*********9999999**************.* PP FAR1 76 wevtkleleHnHelap 91 w+v++l+l+HnH+l+p Sevir.2G232300.1.p 171 WRVIRLDLDHNHKLSP 186 *************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.5E-20	81	186	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MIPNPKDDAS EAILMSENVE EDSHDNEEDE DGSQELAEEQ VEAFIRSEQL AASEGNNVDI 60 DSKYTPQIGM EFKDRDDAHH FFSFYGFLAR FEVVVAHVTR TTSKKRNNEV YKQEMKCHRY 120 GKPLKNKEDD VIEDTLVVEV ENTDKEKRKT NVQVKTNCKC VMVVKEIAGI WRVIRLDLDH 180 NHKLSPQNRN QLFSGRKYMT YMKKGMIRTL NDNNIPTRKM IAILSYLRGG LTTLPHKTKD 240 VQNIRTKINR ELLRFNLHMW SIIDIKGSKK KEIATQYLSE EFKRIEKHLD MLLAEADRGA 300 SSSVTIESGK AISLEESSRN LLEEIVVLRD PDRI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.2G232300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004959040.2	2e-97	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	K4A1D1	1e-173	K4A1D1_SETIT; Uncharacterized protein
STRING	Si032674m	1e-173	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15170	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	4e-08	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Sevir.2G232300.1.p