PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G109900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 310aa    MW: 35052.9 Da    PI: 5.3776
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G109900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.2e-13141184447
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         WT eE+ +++ + +++G g Wk I+r++ ++Rt+ q+ s+ qky
  Sevir.2G109900.1.p 141 WTNEEHRQFLYGLRKYGRGKWKDISREFVTTRTPVQVSSHAQKY 184
                         *******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071714567IPR001005SANT/Myb domain
PROSITE profilePS5129415.277133189IPR017930Myb domain
SuperFamilySSF466891.93E-16135189IPR009057Homeodomain-like
SMARTSM007172.5E-11137187IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.7E-15137188IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.2E-10138184IPR009057Homeodomain-like
CDDcd001672.27E-9141185No hitNo description
PfamPF002498.0E-10141184IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDPMFNDEWS ALEIEMVKSL IASHNPNNNF VDGPNKKHND IVNDIQACFP WKERHQVIEF  60
YVELVVEMMS LTQSGNHSVV AIDNSVNNNS RIPVEDPSID NMDLLFAHTT DKIPEAMQMV  120
DEVSKRKAII PPKGRNKGSF WTNEEHRQFL YGLRKYGRGK WKDISREFVT TRTPVQVSSH  180
AQKYFHRQNT SEKQRYSIND VSLYDAEPWA RNNSSNWEAP AFAGGAYNPN YYGSGSQVPT  240
RNNLAQVWPP IMYSADQASS SQATTWTGQQ MGPSSSAALA MEDAGSQAAW IGDQQGDILR  300
EQWMDIDKV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G109900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959145.10.0transcription factor SRM1
TrEMBLK4A1570.0K4A157_SETIT; Uncharacterized protein
STRINGSi032599m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10580.23e-25MYB_related family protein