PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G032900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 346aa    MW: 38451.9 Da    PI: 6.5771
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G032900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.95.9e-51451752128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          pGfrFhPtdeelv++yL++kv+gk+l++ e+ik++diyk++PwdLp +++ +++kewyfF+ r +ky+++ r+nr+t sg+Wkatg d++
  Sevir.2G032900.1.p  45 LPGFRFHPTDEELVTFYLRRKVAGKRLSI-EIIKDFDIYKHDPWDLPkSSTISGDKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRP 134
                         69***************************.89***************445556899*********************************** PP

                 NAM  92 vlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s+     g  +glkk+Lvfy+g+a kg+kt+W+mhe+rl
  Sevir.2G032900.1.p 135 IYSAaagrAGDSIGLKKSLVFYRGSAGKGTKTEWMMHEFRL 175
                         ***988777778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-5543202IPR003441NAC domain
PROSITE profilePS5100555.78644202IPR003441NAC domain
PfamPF023652.6E-2546175IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MPTRSSSSME KEQQHMAKEN SLEMKGSEHG EVVLLGDEEE EEDVLPGFRF HPTDEELVTF  60
YLRRKVAGKR LSIEIIKDFD IYKHDPWDLP KSSTISGDKE WYFFCLRGRK YRNSIRPNRV  120
TGSGFWKATG IDRPIYSAAA GRAGDSIGLK KSLVFYRGSA GKGTKTEWMM HEFRLPPRPE  180
SPHTSPSEQE AEVWTICRIF RRSITYKKHP QQQHVAGGKV PAAAVVAQPD SSSITAGSLE  240
SETGDEYTNG CLPQQAPAIN SVSSGYGYGN QHQFHGQWSS SALHTAATAP LPSPTTMAAF  300
HHGGVLSSPA APDDSLYYKD GSSWDDIGRM VMELTDDMFY DTRYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-49372088174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G032900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955426.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK554e-79NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A368PUM30.0A0A368PUM3_SETIT; Uncharacterized protein
STRINGSi030477m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.19e-78NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]