PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G378300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 639aa    MW: 69637.5 Da    PI: 4.2561
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G378300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.46e-49171531128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya.........tgkrknratks 80 
                         l+pGfrFhPtdeelv++yL+++v g++l++ ++i+evd+y++ePwdLp  +++++++ +wyfF++ d+k a          g+r+nrat +
  Sevir.1G378300.1.p  17 LAPGFRFHPTDEELVSYYLRRRVLGRRLRV-DAIAEVDLYRLEPWDLPslSRIRSRDAQWYFFAHLDRKIAgagaggrggPGNRTNRATPR 106
                         579***************************.99***************5448999999***********99877777665577******** PP

                 NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         gyWk+tgkd+ev++ +g++vg+kktLvf+ grapkge+++Wvmheyrl
  Sevir.1G378300.1.p 107 GYWKTTGKDREVYH-RGKAVGMKKTLVFHAGRAPKGERSNWVMHEYRL 153
                         **************.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-5512171IPR003441NAC domain
PROSITE profilePS5100555.42617171IPR003441NAC domain
PfamPF023651.1E-2619153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MSSLSPLDSS PAAEVPLAPG FRFHPTDEEL VSYYLRRRVL GRRLRVDAIA EVDLYRLEPW  60
DLPSLSRIRS RDAQWYFFAH LDRKIAGAGA GGRGGPGNRT NRATPRGYWK TTGKDREVYH  120
RGKAVGMKKT LVFHAGRAPK GERSNWVMHE YRLLDADGPQ DLHVVCRIFQ KHGSGPQNGA  180
QYGAPYMEEE WEEEEDAIEN APVSGASAGM AAITCAVDEE SNEEDENGYC KINELAQAHE  240
DSPEMAPLQA QGSKDTSDGS CADGVISLEE ILQEPLSNIN AENIGSSEGQ NATDDNFSVD  300
DLLSTCPTKD DGYVGQDGTL NGSYPEDGNH TNWPLRAYSN QNYANGTLSA EEFFDTQNDT  360
NGNAYSEYPQ ADGFPVPHQQ VDGSMVFYDA PSDYNLVDGN DDFVYLNDLL NEPLGNESLF  420
DGDDMMAYFD ATENDFKYDI SGSAKSSNYQ FAEMSTNFAQ KGDNKVGFTF DGIAKASEAN  480
VQYSASSSGS HEDLYPDSAV PDDDTGDKTF GKRFAGMLVS IPAPPAMASE FPPATGKSVG  540
VLSAVSPSSI RVTAGIIQLD GLSFTGASER WPLQKNGDFS LLLSFTVESD MSTKAACFEQ  600
ASRMSTIPMV LRSGMYLFFV SAMILVLSYK IGSCIYSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-441315311140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G378300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954444.10.0NAC domain-containing protein 53
TrEMBLK3YQS60.0K3YQS6_SETIT; Uncharacterized protein
STRINGSi016620m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129312833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.18e-62NAC domain containing protein 2