PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G344700.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NF-YA | ||||||||
Protein Properties | Length: 264aa MW: 28718.5 Da PI: 11.229 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103 | 2.7e-32 | 94 | 150 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVN+KQy++Il+RRq Rakle+++kl ++rkpylheSRh hA++R+RgsgGrF Sevir.1G344700.3.p 94 NEPIYVNPKQYHGILRRRQLRAKLEAQNKL-VRARKPYLHESRHLHAMKRARGSGGRF 150 59****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 9.5E-38 | 92 | 153 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.535 | 93 | 153 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.7E-28 | 95 | 150 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 9.6E-24 | 96 | 118 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 9.6E-24 | 127 | 150 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MPSFLLSGNS LRKMVNDHMR STLTFDNKQP LFASQDIDYI QPIACISYPY NDSGSGGVWA 60 AYGSRASAAT VFPPKIAGGG TSARIPLPLE LAENEPIYVN PKQYHGILRR RQLRAKLEAQ 120 NKLVRARKPY LHESRHLHAM KRARGSGGRF LNTKQLQQQQ QSHTASTRST ANGTSSSGST 180 HLRLGGGTAG NQAMPTTKAM ASHDNCKKAV ASAPAFTVTP MLRRDDAFFQ HPSHHLSFSG 240 HFGQASAQAG MHKGTQQRVP VMR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 7e-21 | 94 | 155 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G344700.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954092.1 | 0.0 | nuclear transcription factor Y subunit A-8 isoform X2 | ||||
TrEMBL | A0A368PUD3 | 0.0 | A0A368PUD3_SETIT; Uncharacterized protein | ||||
STRING | Si019645m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 2e-38 | nuclear factor Y, subunit A5 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G344700.3.p |