PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G344700.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YA
Protein Properties Length: 264aa    MW: 28718.5 Da    PI: 11.229
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G344700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.7e-3294150158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep+YVN+KQy++Il+RRq Rakle+++kl  ++rkpylheSRh hA++R+RgsgGrF
  Sevir.1G344700.3.p  94 NEPIYVNPKQYHGILRRRQLRAKLEAQNKL-VRARKPYLHESRHLHAMKRARGSGGRF 150
                         59****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.5E-3892153IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.53593153IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-2895150IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.6E-2496118IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.6E-24127150IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MPSFLLSGNS LRKMVNDHMR STLTFDNKQP LFASQDIDYI QPIACISYPY NDSGSGGVWA  60
AYGSRASAAT VFPPKIAGGG TSARIPLPLE LAENEPIYVN PKQYHGILRR RQLRAKLEAQ  120
NKLVRARKPY LHESRHLHAM KRARGSGGRF LNTKQLQQQQ QSHTASTRST ANGTSSSGST  180
HLRLGGGTAG NQAMPTTKAM ASHDNCKKAV ASAPAFTVTP MLRRDDAFFQ HPSHHLSFSG  240
HFGQASAQAG MHKGTQQRVP VMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-2194155263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G344700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954092.10.0nuclear transcription factor Y subunit A-8 isoform X2
TrEMBLA0A368PUD30.0A0A368PUD3_SETIT; Uncharacterized protein
STRINGSi019645m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.12e-38nuclear factor Y, subunit A5