PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G280700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 464aa MW: 49560.4 Da PI: 8.5793 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.7e-16 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++G W++I +++g ++t+ q++s+ qk+ Sevir.1G280700.1.p 59 REKWTEDEHKRFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 103 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.36E-15 | 53 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.191 | 54 | 108 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 7.3E-16 | 57 | 106 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.0E-12 | 58 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 59 | 102 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-9 | 59 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.31E-10 | 61 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MAYLEENQMA TDEVAVAVGA GGEAAVDHRK DPLDPSDMDL SGEEHVPKAR KPYTITKQRE 60 KWTEDEHKRF LEALQLHGRA WRRIQEHIGT KTAVQIRSHA QKFFTKVVRE SSGSNTAGGA 120 APAIQIPPPR PKRKPAHPYP RKVDGAAKKH VPALKQLEKP PLRTQSLRDQ DDGSPTSVLT 180 TARTVLRAEA LGSVFANSSS GSRSPAPSAT GSDEPSSVDR EDGCVSPSVA TAELVARTAN 240 TKVFGDGKVS CIGTEASVFK LFGKKVVVKD PLEHLKTDAS ATSVAQATRN AIPFGAAEGS 300 SWNPWPTGVQ MQQLMYFVPQ PDGFAAQSAV PWLAYNGALP CALFYPQAAA PSAQHHHHNQ 360 PSEPLNHKRV QREESLTGSN TASSAVPAAS AAQNSDAAES HGPRQENTSE SAIAVPRLTK 420 CPSSASFSRR GFVPYKRCAA ESEAPRPVAA GEEADGELTR LCL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00515 | DAP | Transfer from AT5G17300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G280700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU965182 | 1e-130 | EU965182.1 Zea mays clone 284337 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953478.1 | 0.0 | protein REVEILLE 2 isoform X2 | ||||
TrEMBL | A0A368PS53 | 0.0 | A0A368PS53_SETIT; Uncharacterized protein | ||||
STRING | Si017289m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2722 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 8e-35 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G280700.1.p |