PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G275900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C3H | ||||||||
Protein Properties | Length: 429aa MW: 46062.2 Da PI: 7.9427 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.2 | 5.1e-07 | 106 | 128 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f+++ C+yG+rC++ H+ Sevir.1G275900.1.p 106 RPCKYFLAGTDCSYGERCRYPHS 128 79******55**********887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 9.995 | 28 | 54 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.11 | 29 | 53 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.802 | 102 | 130 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.005 | 102 | 129 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-4 | 106 | 128 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-4 | 106 | 128 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.2E-5 | 107 | 137 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00320 | 2.0E-6 | 134 | 173 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 4.12E-47 | 136 | 425 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 1.5E-46 | 137 | 421 | IPR015943 | WD40/YVTN repeat-like-containing domain |
Pfam | PF00400 | 1.7E-6 | 140 | 173 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 14.251 | 141 | 182 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 21.937 | 141 | 390 | IPR017986 | WD40-repeat-containing domain |
PRINTS | PR00320 | 2.7E-7 | 160 | 174 | IPR020472 | G-protein beta WD-40 repeat |
PROSITE pattern | PS00678 | 0 | 160 | 174 | IPR019775 | WD40 repeat, conserved site |
SMART | SM00320 | 2.1 | 213 | 250 | IPR001680 | WD40 repeat |
SMART | SM00320 | 0.0021 | 257 | 294 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.029 | 262 | 294 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 11.143 | 264 | 303 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 2.7E-7 | 281 | 295 | IPR020472 | G-protein beta WD-40 repeat |
PROSITE pattern | PS00678 | 0 | 281 | 295 | IPR019775 | WD40 repeat, conserved site |
SMART | SM00320 | 2.1E-4 | 297 | 334 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0093 | 299 | 333 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 2.7E-7 | 321 | 335 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 11 | 338 | 381 | IPR001680 | WD40 repeat |
SMART | SM00320 | 31 | 384 | 421 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MDVETDGRFG NKRVHNRLGP GSGGGPSSTT GKVCNYWRAG RCNRFPCPYL HSELPEAAAP 60 PKRPSGPGGN VWRNPNSGGR GGGGHNRWGR GPGGGSGTAA HRPPDRPCKY FLAGTDCSYG 120 ERCRYPHSYC ISDSITMLTL LKGHEKGVTG IALPTGSDKL YSGSKDGTVR MWDCQTGQCA 180 GVSPMGREVG CMISEGPWLF VGIPDAVKVW NTQTSAVMDL TGPTGQVYAL AVASELLFAA 240 TQDGRILAWR FSAATNRFEP AASLDGHKLA VVSLIVGGMR LYSASMDKTI RVWDLATLQC 300 IQTLSDHTDV VMSVLCWDQF LLSCSLDQTI KVWAATETGN LEVTYTHKEE QGALALSGMP 360 DAQSKPVLLC SLNDNTVRLY DLPSFSDRGR IFSKQEIRAI QMGPAGLFFT GDGTGELKVW 420 QWVDGAQT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 8e-19 | 138 | 420 | 8 | 320 | Tako8 |
6g6n_A | 8e-19 | 138 | 420 | 8 | 320 | Tako8 |
6g6n_B | 8e-19 | 138 | 420 | 8 | 320 | Tako8 |
6g6n_C | 8e-19 | 138 | 420 | 8 | 320 | Tako8 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 83 | GGRGGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G275900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034566 | 0.0 | BT034566.1 Zea mays full-length cDNA clone ZM_BFb0001E08 mRNA, complete cds. | |||
GenBank | EU972087 | 0.0 | EU972087.1 Zea mays clone 374674 nucleic acid binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953439.1 | 0.0 | zinc finger CCCH domain-containing protein 17 | ||||
Swissprot | Q0DYP5 | 0.0 | C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17 | ||||
TrEMBL | K3YSM8 | 0.0 | K3YSM8_SETIT; Uncharacterized protein | ||||
STRING | Si017273m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2026 | 34 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51980.1 | 1e-175 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G275900.1.p |
Publications ? help Back to Top | |||
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