PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G212500.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 368aa    MW: 39419.6 Da    PI: 7.2027
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G212500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.33.4e-54191441128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+++yL++k+++ ++   +++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+e
  Sevir.1G212500.3.p  19 LPPGFRFHPTDEELITHYLTRKAADPRFAP-RAVGEADLNKCEPWDLPARATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDRE 108
                         79*************************888.88***************998999************************************* PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++ +++lvg+kktLvfy+grap+g kt Wvmheyrl
  Sevir.1G212500.3.p 109 IFR-GKALVGMKKTLVFYTGRAPRGGKTGWVMHEYRL 144
                         ***.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-648178IPR003441NAC domain
PROSITE profilePS5100558.919178IPR003441NAC domain
PfamPF023651.4E-2920144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MEHDVHHHQL LQQQQTMELP PGFRFHPTDE ELITHYLTRK AADPRFAPRA VGEADLNKCE  60
PWDLPARATM GEKEWYFFCV KDRKYPTGLR TNRATESGYW KATGKDREIF RGKALVGMKK  120
TLVFYTGRAP RGGKTGWVMH EYRLDGKHAG TSSRSSLIPS IRAGASKDEW VLCRVFKKSI  180
EPPLVAAGGK RSSGPCVEVA DVVGPSSMSM ADDLAACALP PLMDVSGGSG GGAMSLSAVA  240
GIELPPPAQH VTCFSNALQG QFLNPPFLLP SAGPAAAADH HLAMASSASP FLASMMQAAQ  300
YDGAADVGGM VHELLQEGGG WYSKLGERER LSGGGGASQD TGLTSEVNPG EISSRQHMDH  360
AASLWGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-561717815165NO APICAL MERISTEM PROTEIN
1ut4_B1e-561717815165NO APICAL MERISTEM PROTEIN
1ut7_A1e-561717815165NO APICAL MERISTEM PROTEIN
1ut7_B1e-561717815165NO APICAL MERISTEM PROTEIN
3swm_A1e-561717818168NAC domain-containing protein 19
3swm_B1e-561717818168NAC domain-containing protein 19
3swm_C1e-561717818168NAC domain-containing protein 19
3swm_D1e-561717818168NAC domain-containing protein 19
3swp_A1e-561717818168NAC domain-containing protein 19
3swp_B1e-561717818168NAC domain-containing protein 19
3swp_C1e-561717818168NAC domain-containing protein 19
3swp_D1e-561717818168NAC domain-containing protein 19
4dul_A1e-561717815165NAC domain-containing protein 19
4dul_B1e-561717815165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G212500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0658980.0BT065898.1 Zea mays full-length cDNA clone ZM_BFb0063K15 mRNA, complete cds.
GenBankKJ7280210.0KJ728021.1 Zea mays clone pUT6157 NAC transcription factor (NAC40) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952889.10.0NAC domain-containing protein 92
RefseqXP_022679460.10.0NAC domain-containing protein 92
TrEMBLK3YTH50.0K3YTH5_SETIT; Uncharacterized protein
STRINGSi017567m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-83NAC domain containing protein 100