PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G212500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 368aa MW: 39419.6 Da PI: 7.2027 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.3 | 3.4e-54 | 19 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL++k+++ ++ +++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+e Sevir.1G212500.2.p 19 LPPGFRFHPTDEELITHYLTRKAADPRFAP-RAVGEADLNKCEPWDLPARATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDRE 108 79*************************888.88***************998999************************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +++lvg+kktLvfy+grap+g kt Wvmheyrl Sevir.1G212500.2.p 109 IFR-GKALVGMKKTLVFYTGRAPRGGKTGWVMHEYRL 144 ***.99*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-64 | 8 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.9 | 19 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-29 | 20 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MEHDVHHHQL LQQQQTMELP PGFRFHPTDE ELITHYLTRK AADPRFAPRA VGEADLNKCE 60 PWDLPARATM GEKEWYFFCV KDRKYPTGLR TNRATESGYW KATGKDREIF RGKALVGMKK 120 TLVFYTGRAP RGGKTGWVMH EYRLDGKHAG TSSRSSLIPS IRAGASKDEW VLCRVFKKSI 180 EPPLVAAGGK RSSGPCVEVA DVVGPSSMSM ADDLAACALP PLMDVSGGSG GGAMSLSAVA 240 GIELPPPAQH VTCFSNALQG QFLNPPFLLP SAGPAAAADH HLAMASSASP FLASMMQAAQ 300 YDGAADVGGM VHELLQEGGG WYSKLGERER LSGGGGASQD TGLTSEVNPG EISSRQHMDH 360 AASLWGY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-56 | 17 | 178 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-56 | 17 | 178 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-56 | 17 | 178 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-56 | 17 | 178 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-56 | 17 | 178 | 18 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-56 | 17 | 178 | 18 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-56 | 17 | 178 | 18 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-56 | 17 | 178 | 18 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-56 | 17 | 178 | 18 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-56 | 17 | 178 | 18 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-56 | 17 | 178 | 18 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-56 | 17 | 178 | 18 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-56 | 17 | 178 | 15 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-56 | 17 | 178 | 15 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G212500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065898 | 0.0 | BT065898.1 Zea mays full-length cDNA clone ZM_BFb0063K15 mRNA, complete cds. | |||
GenBank | KJ728021 | 0.0 | KJ728021.1 Zea mays clone pUT6157 NAC transcription factor (NAC40) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952889.1 | 0.0 | NAC domain-containing protein 92 | ||||
Refseq | XP_022679460.1 | 0.0 | NAC domain-containing protein 92 | ||||
TrEMBL | K3YTH5 | 0.0 | K3YTH5_SETIT; Uncharacterized protein | ||||
STRING | Si017567m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-83 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G212500.2.p |