PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G197000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 205aa MW: 22627.1 Da PI: 6.2198 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109.3 | 4.3e-34 | 7 | 124 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGf+F P+de+lv ++L++kv++ +++ ++i++v +++++Pw+L+ ++ + ++wyfFs++++ +r+ +gyW+ g d++ Sevir.1G197000.1.p 7 LPPGFHFFPSDEDLVIHFLRRKVANLPCRP-DIIPTVLLHHYNPWELNGTALQAGNQWYFFSHAAQ--------SRTSPNGYWNPIGADET 88 79*************************999.99**************965566789******9865........678899*********** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s +g vglkktL+f +g+ +kg kt+W+mhey+l Sevir.1G197000.1.p 89 VTS-SGCIVGLKKTLIFCTGEPSKGFKTNWIMHEYHL 124 ***.999*****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-45 | 4 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.634 | 7 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-21 | 8 | 124 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MGGATNLPPG FHFFPSDEDL VIHFLRRKVA NLPCRPDIIP TVLLHHYNPW ELNGTALQAG 60 NQWYFFSHAA QSRTSPNGYW NPIGADETVT SSGCIVGLKK TLIFCTGEPS KGFKTNWIMH 120 EYHLQDGGYN VSGSSTSSSS SSSRKSQRKR VHSSTESNSW VVCRVFESSC GSQVSFHDEG 180 TELSCLDEVF LSLDDYDEVS LPNN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-33 | 6 | 173 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-33 | 6 | 173 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-33 | 6 | 173 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-33 | 6 | 173 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-33 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-33 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-33 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-33 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-33 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-33 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-33 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-33 | 6 | 173 | 19 | 173 | NAC domain-containing protein 19 |
4dul_A | 1e-33 | 6 | 173 | 16 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-33 | 6 | 173 | 16 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G197000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952810.1 | 1e-152 | NAC domain-containing protein 104 | ||||
Swissprot | Q8GWK6 | 1e-60 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | K3YVS2 | 1e-151 | K3YVS2_SETIT; Uncharacterized protein | ||||
STRING | Si018368m | 1e-151 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3667 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 8e-61 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G197000.1.p |
Publications ? help Back to Top | |||
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