PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G172600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 192aa MW: 21315.4 Da PI: 9.0621 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31 | 5.9e-10 | 143 | 187 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+ E+ l++ + + g+ W++ +r+ + Rt+ q+ s++qky+ Sevir.1G172600.1.p 143 KWTEYEHRLFLAGLPFYRGN-WNAMSREYLTSRTASQIASHYQKYR 187 8*****************99.************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 42 | 27 | 75 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 9.401 | 136 | 191 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.54E-10 | 138 | 189 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-10 | 139 | 189 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.4E-5 | 140 | 189 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-7 | 143 | 187 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-7 | 143 | 188 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00344 | 143 | 186 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MHHDGYAAAA AAPLLALAAS PTLEPEQEPK WTRRDDKFLE LLLFNRNTVS LHIASSIIGK 60 TPAQIHQRCT FMFAELSHVL KSLEVLTPLV WDMEIAAMAA AAEEEVVPEA VVPAAPPVAA 120 RKNSAERATG AGCAKRNKKA AEKWTEYEHR LFLAGLPFYR GNWNAMSREY LTSRTASQIA 180 SHYQKYRNRE K* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G172600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954950.1 | 1e-105 | transcription factor MYBS3-like | ||||
TrEMBL | A0A368PM01 | 1e-97 | A0A368PM01_SETIT; Uncharacterized protein | ||||
STRING | Si039462m | 3e-96 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14418 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16350.1 | 1e-13 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G172600.1.p |