PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G161700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 350aa MW: 40264.1 Da PI: 8.8897 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 22.2 | 4.7e-07 | 36 | 89 | 38 | 91 |
FAR1 38 egkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 eg+ ++ek++ ++ + +++++r+g a kvk++k ++w+ +++e+ HnH+l p Sevir.1G161700.1.p 36 EGFLKTEKEN-NQPQIEKTSKRVGYPAYAKVKEDKkGKQWYFDHVEEAHNHKLHP 89 6777888877.89999*****************998999*************975 PP | |||||||
2 | FAR1 | 30.8 | 9.8e-10 | 204 | 290 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleHn 86 +f+ YA+ +GFs+++s+ k+ +r ++Cs+egk + k ++ + +++++ +++C+a+lk + + + +++k +l H Sevir.1G161700.1.p 204 QFFMGYAELAGFSMKMSNRKT-------FSRVMRCSCEGKGDYYKGDEALRVQNKMTMKMKCNAHLKFMRVYdsegnEVDMVIEKANLFHI 287 69************9987554.......5899*************9999999*************98877664323233456677777788 PP FAR1 87 Hel 89 H l Sevir.1G161700.1.p 288 HLL 290 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.2E-6 | 204 | 290 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MGYPITVGSR TGGDDSIITA GLALKPVVMM DTIIAEGFLK TEKENNQPQI EKTSKRVGYP 60 AYAKVKEDKK GKQWYFDHVE EAHNHKLHPS PRMVRNAEQA REGRDGDLDK LFQFCRECKE 120 STKYFYWDVN FDPKTKVLRS IFWSHTSQRA ECKDFGDVIM FDTTHKTNSI FVGANYNPKN 180 KESMDPELIP RKGMSFHSEA EAKQFFMGYA ELAGFSMKMS NRKTFSRVMR CSCEGKGDYY 240 KGDEALRVQN KMTMKMKCNA HLKFMRVYDS EGNEVDMVIE KANLFHIHLL QTPLKTKQMR 300 SHKSTELILY QIFDELQAAG VSMQSIKNVL QNMHGVELVP ITAWDIENR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G161700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A368QF34 | 5e-95 | A0A368QF34_SETIT; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7609 | 10 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 2e-07 | FAR1-related sequence 7 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G161700.1.p |