PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G137300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 435aa    MW: 47001.5 Da    PI: 4.1966
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G137300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.62e-2291451128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevd...iykvePwdLp.kkvkaeekewyfFskrdkkya..tgkrknratksgyWka 85 
                         lppG+rF+Ptdeelv +yL +++ g++  +  vi e d     +++Pw+L  ++ +++++e yfF k +++     g r+ r+   ++W  
  Sevir.1G137300.1.p   9 LPPGVRFDPTDEELVEFYLLPRALGQPPAVPGVIIEDDaaaTSSCHPWKLLkRHRRTDDDEAYFFEKISSNDDakGGARQARSC-GSRWTW 98 
                         79*************************888888555442337789*****734555677799***9877665522477888864.477888 PP

                 NAM  86 tgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          g+ +   ++     ++++ + k  L + +++a++g +t Wv+hey++
  Sevir.1G137300.1.p  99 AGQRRCPDEAlhlpgGEQVSWGKYALNLQEAHARRG-STGWVLHEYTV 145
                         887443333344455666678899*****9999997.9********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-264161IPR003441NAC domain
PROSITE profilePS5100526.3669162IPR003441NAC domain
PfamPF023653.8E-1410144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MSVAEALGLP PGVRFDPTDE ELVEFYLLPR ALGQPPAVPG VIIEDDAAAT SSCHPWKLLK  60
RHRRTDDDEA YFFEKISSND DAKGGARQAR SCGSRWTWAG QRRCPDEALH LPGGEQVSWG  120
KYALNLQEAH ARRGSTGWVL HEYTVALPQG PSPVKVCHVA FTGRGQKRQR MPDDDDGEGE  180
GQELELQAAP PQHKRAATAS SVITTATPDQ EQQFLNYGTS SAEDFLGSDT GFSQESSVLD  240
PWCAEAGSSK KEPFAPDQEL AQNQECFTSQ SQEQFGNHEG SSIEAYCALL LASELGSSQE  300
PPAGQSLTEE QQWGLQLAQL LCDIGSPRCP PTSPAGAEAG YHEGHIQTTA LEAAADLPPP  360
TDQESCTTDD FFLGWGDLDS FCDTTGVQDD DDVATATPEH LPAMVVEVEP VAGAKSKVKC  420
DLDRHFLDQQ TEVF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G137300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368PM850.0A0A368PM85_SETIT; Uncharacterized protein
STRINGSi019916m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.11e-11NAC domain containing protein 53