PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G130900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 326aa    MW: 34098.9 Da    PI: 4.7618
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G130900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.72.3e-19111451128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLp.kkvkaeekewyfFskrdkkya...tgkrknr.atksgyWk 84 
                         lppG++F+P d+elv +yL ++++g++ ++  v  i++     + PwdL  ++ +++++e yfF++ +   +    g r++r     g W 
  Sevir.1G130900.1.p  11 LPPGVQFRPDDDELVEFYLLPRARGEPAPFPGVtiIDDDAAGITLPWDLLeRHGRGGDDEAYFFVRGSADGEarkPGARQERgCGGGGKWV 101
                         79*************************655444417777777889****7355566888*****987655442225889999778899**9 PP

                 NAM  85 atgk....dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++ +    dk+v++ ++++ +  + L ++ gr  +     Wvmhey l
  Sevir.1G130900.1.p 102 SQKRhvpdDKRVTA-GEKVHWSMHNLNLHMGRGGS---VGWVMHEYVL 145
                         88765554566666.88888888999999776655...9*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-265159IPR003441NAC domain
PROSITE profilePS5100525.7911161IPR003441NAC domain
PfamPF023651.8E-1412145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSSSVPEILG LPPGVQFRPD DDELVEFYLL PRARGEPAPF PGVTIIDDDA AGITLPWDLL  60
ERHGRGGDDE AYFFVRGSAD GEARKPGARQ ERGCGGGGKW VSQKRHVPDD KRVTAGEKVH  120
WSMHNLNLHM GRGGSVGWVM HEYVLTDSSF PSVKICHVSF TGHGKNRKRM PGSAVDGQSE  180
SAPMMKRARV AATATAGGSS SSGSAGSTTT TADQDSGVGC TSGPAPQAAF TGEGISEWGI  240
PLAASAADAA TEQLVPEHVM MPMVQESAGM AELEHQYLCG GDEGQQEFVA PMGITLDGFG  300
GASGFGDMDA GAQPAFVNWG GVQFY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G130900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954806.10.0NAC domain-containing protein 48
TrEMBLA0A368PK740.0A0A368PK74_SETIT; Uncharacterized protein
STRINGSi019074m1e-157(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8717946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.17e-12NAC domain containing protein 53