PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G127500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 322aa    MW: 35822.3 Da    PI: 4.5026
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G127500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.72.3e-19121392128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgk 88 
                         ppG+ F+P d+elv ++L ++++g+   ++   vi++    ++ Pw+L k++   ++ + yfF++++++ a   r+ r    +g+W ++ +
  Sevir.1G127500.1.p  12 PPGVNFRPDDDELVEFFLLPRLRGEXswFPGVVVIDDDSAANTLPWNLLKRHGLvDDGNAYFFVHTNNEVA---RQDRyCPGDGTWVSQRQ 99 
                         9************************9776665679999**********754433266699*****999876...77775778*****9988 PP

                 NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +    +  +++ ++ ++ L +  gr +kg +  Wvmhey+l
  Sevir.1G127500.1.p 100 ESGSSCIcGETIKWRRTNLNLQMGRGKKG-SMGWVMHEYTL 139
                         766555526666778889*********98.899******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-244154IPR003441NAC domain
PROSITE profilePS5100524.31411155IPR003441NAC domain
PfamPF023651.9E-1412139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MSTKAAQILG XPPGVNFRPD DDELVEFFLL PRLRGEXSWF PGVVVIDDDS AANTLPWNLL  60
KRHGLVDDGN AYFFVHTNNE VARQDRYCPG DGTWVSQRQE SGSSCICGET IKWRRTNLNL  120
QMGRGKKGSM GWVMHEYTLT EPPCPFLKIC HVTFTGHGKW RKRVPDDESD CQATGEPASK  180
RPRVAVTAAA VDTSVPAIFQ QEHSLPFPID QGISAMTHQQ QMVMMPMPDD KNDCQXXNSS  240
SAXCAYGSTM TTADQDSGAA HAYAGEESXQ DTDEETLEWF RLDGKDLLAD AEPTAEQHYG  300
LDQQDQLFWR SIGVDTENIV F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G127500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954806.12e-60NAC domain-containing protein 48
TrEMBLA0A368PKR30.0A0A368PKR3_SETIT; Uncharacterized protein
STRINGSi019409m0.0(Setaria italica)
STRINGSi019546m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8717946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.17e-09NTM1-like 8