PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G127300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 565aa    MW: 61670.6 Da    PI: 4.1051
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G127300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.31e-2181391128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgk 88 
                         +pp frF+P++ elv +yL ++++g++     +i++    ++ PwdL  ++  ++e+e yf ++++ +++ g r+ r+ +   g Wk + +
  Sevir.1G127300.1.p   8 MPPAFRFRPKELELVEFYLLPRARGQDPYPGVIIEDDAAGSSLPWDLFeRHGLGSEDEAYFLVRTSDAKKPGARQDRSCDggVGSWKIQSS 98 
                         699***********************9666355888889999*****723333466799******************87723566**8888 PP

                 NAM  89 dkevlskkgelvglkk.tLvfykgrapkgektdWvmheyrl 128
                          ++ l+ +ge++ ++k  L ++ g+ ++g +  Wvmhey++
  Sevir.1G127300.1.p  99 LEKSLRVGGEKISCRKsNLNLHMGKGKNGGSVGWVMHEYTI 139
                         666666677777765527*********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-265146IPR003441NAC domain
PROSITE profilePS5100529.3558156IPR003441NAC domain
PfamPF023651.2E-139139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MSKILERMPP AFRFRPKELE LVEFYLLPRA RGQDPYPGVI IEDDAAGSSL PWDLFERHGL  60
GSEDEAYFLV RTSDAKKPGA RQDRSCDGGV GSWKIQSSLE KSLRVGGEKI SCRKSNLNLH  120
MGKGKNGGSV GWVMHEYTIA APPCPSLVKI CHIAFTGHGK KRKRVPDYQE DCQIGQASSQ  180
RARVVATAAG GCSGGMMFDP DSGAVVYASA DQVPTQDNIL PQSPLLASSN FLSFPSAASA  240
NAEQYQELEQ QVPTTEEKVM MPQLMVEYAS ADEERSQLVL TNDIVPQSPR VDISDYLGFP  300
SAAPANAEQY QELEQQVPST EEQQVMTPQL MVHTSADEER SQLVPTDDIF LLSPLLDISD  360
YLSFPSAATA NAEQGQELEQ QVPSTAEEHV MMPQLMVYSS ADEERSQLLL TNDDIFRQSP  420
LLNSSDSLVF PSAEPGVAEQ GQELEQQVPS TEEEQVMVPQ LMDQQSSSMA EPEQLSAGEL  480
ELWSFIGVDV QSSNCAEQEE FRGSIAVDSN TVVPRIGNME GDHQDQQDFW SLSNVDGVQS  540
NCTVPDMAVG ALGGAHWGGY CITC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-13813915140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G127300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952258.10.0uncharacterized protein LOC101779761
TrEMBLK3Z0R40.0K3Z0R4_SETIT; Uncharacterized protein
STRINGSi020131m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1787534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.13e-16NTM1-like 8