PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G125800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 583aa    MW: 63713.1 Da    PI: 4.209
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G125800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.87.1e-22451761128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgk 88 
                         +pp frF+P++ elv +yL ++++g++     +i++    ++ PwdL  ++  ++e+e yf ++++++++ g r+ r+ +   g Wk + +
  Sevir.1G125800.1.p  45 MPPAFRFRPKELELVEFYLLPRARGQDPYPGVIIEDDAAGSSLPWDLFeRHGLGSEDEAYFLVRTSEAKKPGARQDRSCDggVGSWKIQSS 135
                         699***********************9666355888889999*****723333466799******************87723566**8777 PP

                 NAM  89 .dkevlskkgelvgl.kktLvfykgrapkgektdWvmheyrl 128
                          +k++l+ +ge++ + k  L ++ g+ ++g +  Wvmhey++
  Sevir.1G125800.1.p 136 lEKSLLV-GGEKISCrKSNLNLHMGKGKNGGSVGWVMHEYSI 176
                         3666666.66666661557*********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-2735183IPR003441NAC domain
PROSITE profilePS5100529.30145193IPR003441NAC domain
PfamPF023651.5E-1346176IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MQRKRLAVPG QVRWISLEEK ATALMELGSR HQIERSTMPK ILDRMPPAFR FRPKELELVE  60
FYLLPRARGQ DPYPGVIIED DAAGSSLPWD LFERHGLGSE DEAYFLVRTS EAKKPGARQD  120
RSCDGGVGSW KIQSSLEKSL LVGGEKISCR KSNLNLHMGK GKNGGSVGWV MHEYSIAAPP  180
CPSLVKICHI AFTGHGKKRK RVPDYQEDCQ IGQASSQRAR VVATAAGGCS GGMMFDPDSG  240
AVGYASADQV PTQDDILPQS PLLASSDFLG FPSAASANAE QYQELEQLMV EYASADEQRS  300
HLVLTDDSVL QSPYLNISDY LGFPSAAPAN AEQYQDLEQQ VPSTEEQQVM MPQLMVHTSA  360
DEERSQFVPT DDIFLLSPLL DVSDYLGFPS AEPANAEQYQ ELEQQVPSTA EEDVMMPQLM  420
VYSSADEERS QLVLTNDDIF QQSPLLNSSD SLVFPSAATA NAEQGQELEQ QVPSTEEEQV  480
MVPQLMEQQP SSMAELEQLN AGELGVDVHS SNFAEQEEFL SSIAVDNNRV VPRIGNMAGG  540
HQDQQDFWSL SRAAGVQSNC AVPDMAAGVL GCAQWGGYCI TC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-134517615140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G125800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952258.10.0uncharacterized protein LOC101779761
TrEMBLK3Z0R40.0K3Z0R4_SETIT; Uncharacterized protein
STRINGSi020131m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1787534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.18e-16NAC-domain protein 101