PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G053800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 159aa    MW: 18128.3 Da    PI: 6.3572
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G053800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.23.1e-1268114551
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                         ++ rr+++NRe+ArrsR RK+ ++  L   v+eL   N++L  el +
  Sevir.1G053800.1.p  68 RKKRRLASNRESARRSRVRKQRRLNDLSSQVAELLDTNQRLLIELHH 114
                         7899*************************************977765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.8E-1064128IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.3E-964114No hitNo description
PROSITE profilePS5021710.54266129IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.43E-1068118No hitNo description
PfamPF001705.1E-968113IPR004827Basic-leucine zipper domain
PROSITE patternPS0003607186IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MQQNCVANLA CLPGLDFTSF FLPQNDPHIY DFSPLDMVDP YNCNGSTTIS SMSAETADNQ  60
ERHGNDERKK RRLASNRESA RRSRVRKQRR LNDLSSQVAE LLDTNQRLLI ELHHMIAKHA  120
RIVRENAKLR EEAADLQKRL DEMDVEEAEA APRTPEVV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086RRSRVRK
28087RRSRVRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G053800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660928.11e-114basic leucine zipper 8
TrEMBLK3YXV11e-113K3YXV1_SETIT; Uncharacterized protein
STRINGSi019099m1e-113(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127422735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.16e-07basic leucine-zipper 42