PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G027800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 241aa MW: 25048.1 Da PI: 5.3332 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6.1e-17 | 46 | 93 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e Aa+a++aa++ Sevir.1G027800.1.p 46 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEIAARAHDAAALV 93 57*****998.**********843...6*********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.27E-18 | 46 | 105 | No hit | No description |
Pfam | PF00847 | 3.0E-11 | 46 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.866 | 47 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-30 | 47 | 106 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-33 | 47 | 110 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-20 | 47 | 104 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.7E-10 | 48 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-10 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MSEGELSSPA SSGGTFSPPQ SPSEAEPRHG RRGGKKRARD GGQKHPSYRG VRMRAWGKWV 60 SEIREPRKKS RIWLGTFPTP EIAARAHDAA ALVVKGPAAV LNFPEMATAL PRPASAAPRD 120 VQAAAARAAA MEPAPTPGAS APAVAALPTS PQVPVAGQLE EDELEAIVEL PPLDEDAAEL 180 VSLGAASFSF HDAAQGSWCV PEWIDDGAGY MAAAHDGLFG LGPDGDHGWT QSVGALLWNL 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-18 | 42 | 104 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G027800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726940 | 2e-99 | KJ726940.1 Zea mays clone pUT3486 AP2-EREBP transcription factor (EREB144) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951388.1 | 1e-167 | ethylene-responsive transcription factor ERF038 | ||||
Swissprot | Q9LYD3 | 3e-51 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | K3YVC6 | 1e-165 | K3YVC6_SETIT; Uncharacterized protein | ||||
STRING | Si018222m | 1e-166 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 5e-30 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G027800.1.p |
Publications ? help Back to Top | |||
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