PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G026300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 215aa    MW: 24427 Da    PI: 12.3672
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G026300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind60.83.4e-19651163696
                         HHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
        HSF_DNA-bind  36 fakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                         fa+++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+ +l+++
  Sevir.1G026300.1.p  65 FARTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLRGQMHLVHR 116
                         9999***************************999.........************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.2E-1413117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.2E-2162114IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.45E-1663116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.1E-1664115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-96981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-98294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MARHRAASSP TPALPAFARR DQLSSLYHLP HITSRRVDGG RPVHRRSHRV GPGQQQLRRR  60
RPLVFARTLL PAHFKHSNFS SFVRQLNTYG FRKVDPDRWE FAHASFLRGQ MHLVHRHSGK  120
RKEDGGDVAG DVESAARVAV EVVRLRREQR ANEERLAAMR RRVRETERRP RQMLALLARA  180
AGGSSPAATW TPWPSTVSVA PCRLFRTRQV AVCC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14049RPVHRRSHRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G026300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1064884e-66AK106488.1 Oryza sativa Japonica Group cDNA clone:002-105-A02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152657.14e-52heat shock factor protein 1
SwissprotQ0DBL62e-45HFC2B_ORYSJ; Heat stress transcription factor C-2b
SwissprotQ6EUG44e-45HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLB4FXG71e-51B4FXG7_MAIZE; Heat stress transcription factor C-1
STRINGGRMZM2G105348_P012e-52(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.13e-24heat shock factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]