PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.1G014000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 336aa MW: 36218.1 Da PI: 7.8852 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.1 | 2.5e-12 | 193 | 218 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ Sevir.1G014000.2.p 193 YQPDICKDYKETGYCGYGDSCKFMHD 218 67789********************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.96E-9 | 191 | 223 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 192 | 219 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 192 | 220 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-12 | 193 | 223 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-10 | 193 | 218 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 1.9E-13 | 255 | 315 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13920 | 6.7E-8 | 269 | 309 | No hit | No description |
SuperFamily | SSF57850 | 7.61E-13 | 269 | 311 | No hit | No description |
PROSITE profile | PS50089 | 10.527 | 270 | 308 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 1.6E-4 | 270 | 307 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 4.93E-7 | 270 | 309 | No hit | No description |
PROSITE pattern | PS00518 | 0 | 285 | 294 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 336 aa Download sequence Send to blast |
MADGGGSGGA GAGEPGSGAG TAPVCSFVRK PPKNIRKRPA APAGSDDDDG GGGGALAALR 60 SKKGPSSAGK LVFSSADASS EPRRFQYESS RTIQSTDSRA TATLETETEF DRDARAIRER 120 QLKQAEEALK KNPSGAASAS ASGAGEVYKG IHGYTDHKAG FRREHTVSSE KAGGSHGPLR 180 ASAHIRLSAR FDYQPDICKD YKETGYCGYG DSCKFMHDRG DYKSGWQMEK EWEEAEKARK 240 RRIAMGGGGS DDEAAEDEDD DDEEALPFAC FICRQPFVDP VVTKCKHYFC EHCALKHHSK 300 NKKCFVCNKA TLGIFNAAQE IRKKMAQDKK QQQEQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 5e-63 | 18 | 325 | 8 | 317 | RING finger protein 113A |
5z58_M | 5e-63 | 18 | 325 | 8 | 317 | RING finger protein 113A |
6ff4_t | 5e-63 | 18 | 325 | 8 | 317 | RING finger protein 113A |
6ff7_t | 5e-63 | 18 | 325 | 8 | 317 | RING finger protein 113A |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.1G014000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951287.1 | 0.0 | zinc finger CCCH domain-containing protein 15 | ||||
Swissprot | Q6K4V3 | 1e-175 | C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | K3YU04 | 0.0 | K3YU04_SETIT; Uncharacterized protein | ||||
STRING | Si017753m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-121 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.1G014000.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|