PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G014000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 336aa    MW: 36218.1 Da    PI: 7.8852
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G014000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12193218126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         y   +C+++ +tG+C yGd+CkF+H+
  Sevir.1G014000.1.p 193 YQPDICKDYKETGYCGYGDSCKFMHD 218
                         67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9191223IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7192219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878192220IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12193223IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10193218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.9E-13255315IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139206.7E-8269309No hitNo description
SuperFamilySSF578507.61E-13269311No hitNo description
PROSITE profilePS5008910.527270308IPR001841Zinc finger, RING-type
SMARTSM001841.6E-4270307IPR001841Zinc finger, RING-type
CDDcd001624.93E-7270309No hitNo description
PROSITE patternPS005180285294IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MADGGGSGGA GAGEPGSGAG TAPVCSFVRK PPKNIRKRPA APAGSDDDDG GGGGALAALR  60
SKKGPSSAGK LVFSSADASS EPRRFQYESS RTIQSTDSRA TATLETETEF DRDARAIRER  120
QLKQAEEALK KNPSGAASAS ASGAGEVYKG IHGYTDHKAG FRREHTVSSE KAGGSHGPLR  180
ASAHIRLSAR FDYQPDICKD YKETGYCGYG DSCKFMHDRG DYKSGWQMEK EWEEAEKARK  240
RRIAMGGGGS DDEAAEDEDD DDEEALPFAC FICRQPFVDP VVTKCKHYFC EHCALKHHSK  300
NKKCFVCNKA TLGIFNAAQE IRKKMAQDKK QQQEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M5e-63183258317RING finger protein 113A
5z58_M5e-63183258317RING finger protein 113A
6ff4_t5e-63183258317RING finger protein 113A
6ff7_t5e-63183258317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G014000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951287.10.0zinc finger CCCH domain-containing protein 15
SwissprotQ6K4V31e-175C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBLK3YU040.0K3YU04_SETIT; Uncharacterized protein
STRINGSi017753m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-121C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]