PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G003600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 708aa    MW: 75132.6 Da    PI: 6.0993
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G003600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix100.11.9e-31521605186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         rW+k+ev aLi++r+ +e r+++  lk+plWeevs++m++ g+ rs+k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+l+
  Sevir.1G003600.1.p 521 RWPKHEVEALIRVRTGLEGRFQEPGLKGPLWEEVSSRMAAAGYGRSAKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFDELD 605
                         8********************************************************************98.99999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0042518580IPR001005SANT/Myb domain
CDDcd122038.84E-30520585No hitNo description
PROSITE profilePS500907.248520578IPR017877Myb-like domain
PfamPF138378.6E-23520607No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MQSGYGGVSE FQQFIMDGGF AMSAPPPPQQ PPQPAAAPEL GGPFRYQPLH HHALPPQHHH  60
HHHAPHMPPH FAHFGAAPPA QAQAGIPFTQ QLLHQAAAAG HHLQLFHEQQ QHHHKPPPQQ  120
PAPARWAPQH HHQQQHHHQQ HHLGFDVEAV PESSGAGAGS AASGGAAPPG VPPFLAAAMN  180
FKLAVDAGGG SGATGGTDDA LNDGGGGAGG GMMLHVGGGD DEAATESRLR RWTGDEETSI  240
KEPTWRPLDI DYLHSTSSSK RAPGKEKVAT PESPAPPAAA AANYFKKGDD NAAAAAASAA  300
SAGGGNYKLF SELEAIYKPG SSGAQTGSGS GLTGDDNAIL EPAMADLPGV AAADAPHLNA  360
SETSAGEDAA AVVQPPQPPA DASRRKRKRR RQEQLSASAS FFERLVQRLM EHQESLHRQF  420
LDAMERRERE RAARDEAWRR QEADKFAREA TARAQDRASA AAREAAIINY LEKISGETIA  480
LPPASGDDTS MSQDAAAGKE LVPYEGGGGG GDTLHLMSTS RWPKHEVEAL IRVRTGLEGR  540
FQEPGLKGPL WEEVSSRMAA AGYGRSAKRC KEKWENINKY FRKAKESGKK RPAHAKTCPY  600
FDELDRLYSR TAGATGAGGS NNNAGDEAAK ASSELLDAVV KYPDAHGGPP GFMFDRERQN  660
EGNGNGGAED GNBDDDDGIA KRRAGGDDQE QEQDDEVESH GHEDEDE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1383388RRKRKR
2384389RKRKRR
3384390RKRKRRR
4385390KRKRRR
5386390RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G003600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0883331e-151BT088333.2 Zea mays full-length cDNA clone ZM_BFc0144A13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951198.10.0trihelix transcription factor GTL1-like
TrEMBLA0A368PHC90.0A0A368PHC9_SETIT; Uncharacterized protein
STRINGGRMZM2G037128_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-39Trihelix family protein