PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400068645 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 199aa MW: 22785.2 Da PI: 10.2824 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59 | 7.6e-19 | 66 | 120 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Le+ F+++ ++ +++eLA+kl+L+ rqV vWFqNrRa+ k PGSC0003DMP400068645 66 RKKLRLTKEQSTLLEDSFKQHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTK 120 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 114.1 | 8.7e-37 | 66 | 154 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLE+sF+++++L +K+ela +L+l+prqv+vWFqnrRARtk+kq+E+d+e++k+++++l++en+rL+ke +eLr+ PGSC0003DMP400068645 66 RKKLRLTKEQSTLLEDSFKQHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTKLKQTEVDCEFMKKWCQSLNDENNRLKKELQELRS 154 69*************************************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.41E-18 | 57 | 123 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.601 | 62 | 122 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-15 | 64 | 126 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.5E-16 | 66 | 120 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.34E-13 | 66 | 123 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-17 | 71 | 120 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 97 | 120 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 4.4E-17 | 122 | 165 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 2.1E-9 | 122 | 154 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MGNNSNEACD TRLTLGLATS DHHKKITCLD LSIIPLHDTS KIDGSSSKTC KFFSKFNSES 60 KKIGMRKKLR LTKEQSTLLE DSFKQHTTLA MGQKQELAAK LKLKPRQVEV WFQNRRARTK 120 LKQTEVDCEF MKKWCQSLND ENNRLKKELQ ELRSIKIDQR ATPFHLSKTR TLALCSSCQK 180 ISRGDTDEKH ETGLERGQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 122 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400068645 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 1e-121 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004243806.2 | 1e-133 | homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 1e-45 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | M1DZM3 | 1e-142 | M1DZM3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400096970 | 1e-143 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 2e-43 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400068645 |
Publications ? help Back to Top | |||
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