PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400067396
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 415aa    MW: 47260.8 Da    PI: 6.5165
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400067396genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.68e-07101120525
                           --SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                           +C+ffar G+C  G++C+F H
  PGSC0003DMP400067396 101 RCKFFAR-GWCIKGNSCRFLH 120
                           5******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.98E-796121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.86496123IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4101120IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MYSLGFELEK EPQDWVNFDD FFFVNKSWHS WKKALLNSYS NVQDSRFERI WTSARQLDAE  60
KLTHFSGKEA IGDLKKTSPR LYALKTRKRS AVDSMDRLAM RCKFFARGWC IKGNSCRFLH  120
TKKHVISHET IKIPHDKGLE EKSLLDGSSH SGENLRLRGG EDSLHPNSQL EYTSKSLAFP  180
SSIIGYSWNN DLLQDTRYSS DYTTTDDWEP SIPFRPSFLL SQMIGYPKSI LYDGIRDSID  240
QSNLGDGSFS VLTKHMQENA DPASTGTNKV QISGHSDILP EKDLPSYDTA VAHQENMNTS  300
SKEDKHLESE RFTSGNEIDI DNKCVNTEST VLKNFHAALV EFVKELLRPT WNEGLISKDA  360
YKKVVKKTVD KVENSLHPNQ IPNTAESTEE YFDLSLPKLT NTIEAYVEKY GNIK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400067396
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016570511.12e-96PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
RefseqXP_016570512.11e-96PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X2
RefseqXP_016570513.17e-97PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X3
TrEMBLM1DWX70.0M1DWX7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000957210.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30042122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-12C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]