PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400065669
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 282aa    MW: 32097.4 Da    PI: 7.0084
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400065669genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.18.5e-10205230227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           kt++C  +  tG+C++ drC+FaHg+
  PGSC0003DMP400065669 205 KTKICIKWETTGQCPFHDRCHFAHGK 230
                           89**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.7E-1171107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-672105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.63474101IPR000571Zinc finger, CCCH-type
SMARTSM003561074100IPR000571Zinc finger, CCCH-type
SMARTSM003560.62128155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.667128156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6129156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-6130154IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-9201234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.357203231IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-14205235IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-7205230IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4205230IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MPMPFAGGGA GGVWPNSPMN HDIFESYCQF EHAPSFKRMT DSNSNLPNSA TFPAIKSRMN  60
SPNLQESKGT SHIFYKTRMC AMFLKETFKN GENCTFAHGV EDLRNPPPNW QDLICVKDRE  120
LNEDQEKLHR MKICKIFYDG EECPYGYKCK FLHERPSKIN TNMARDREIS AICIKTTRNI  180
SDPSMIETSR HENDIVRIEI PIYCKTKICI KWETTGQCPF HDRCHFAHGK SELQEPMLTN  240
FVPTTPSPFS VSLGSNTMVN ASVKEEKGGK NPEVETIEED R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400065669
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345349.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
TrEMBLM1DT580.0M1DT58_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000939940.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.19e-47C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]