PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400064792
Common NameLOC107061204
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 181aa    MW: 20286.1 Da    PI: 6.949
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400064792genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.81.8e-151663249
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          +ien     +tfskRr+g+ KKA+EL + Cda++ ++++s+ gk + +
  PGSC0003DMP400064792 16 KIENRVALLTTFSKRREGLYKKASELVTECDADIGIMMISPAGKPHSF 63
                          69999999***********************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.9E-22766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.194767IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-22878IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-12929IPR002100Transcription factor, MADS-box
PfamPF003198.7E-201663IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-122944IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-124465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MEGKKTKGRQ KIPMRKIENR VALLTTFSKR REGLYKKASE LVTECDADIG IMMISPAGKP  60
HSFFHPTADA IVSRFQNPDM LLSQGIRLDT ITARNKANQL KNRLEELDAV EDAAIAQINF  120
YDQMAEVGQK GWWESIEQLN ADEVIIFEAW LSDTCSKMRH HLNQSENGAS SSLGRESFGV  180
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400064792
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165528.11e-134PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM1DRA51e-132M1DRA5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000931171e-133(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.14e-24AGAMOUS-like 91
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]