PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400062960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 148aa MW: 16943.3 Da PI: 10.305 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.1 | 1.9e-17 | 77 | 127 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr +k + rWvAeIrd+++ +kr +lg+f+ta eA a+++a +++g PGSC0003DMP400062960 77 KKYRGVRLRK-WERWVAEIRDVRT---NKRCWLGSFDTALEASLAYDKATIEIKG 127 59******99.**********865...3*********************988877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 9.8E-31 | 3 | 147 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 1.69E-24 | 77 | 133 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.1E-24 | 78 | 134 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.1E-11 | 78 | 127 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.465 | 78 | 135 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.62E-18 | 78 | 134 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.2E-26 | 78 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-7 | 79 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-7 | 101 | 117 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MGERSVVLPR VVRIYIMDND ATNSSSDEEE NFQGEKSKRH KRICKEIIIR NGKTKVTSKM 60 VSSKEKKDTT LLQENAKKYR GVRLRKWERW VAEIRDVRTN KRCWLGSFDT ALEASLAYDK 120 ATIEIKGANA VTNIIETPSK ESNTIHQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400062960 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027769795.1 | 2e-73 | LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF069-like | ||||
TrEMBL | M1DM95 | 1e-103 | M1DM95_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400091285 | 1e-104 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 6e-27 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400062960 |
Publications ? help Back to Top | |||
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