PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400062952 | ||||||||
Common Name | LOC107061690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 181aa MW: 20896.6 Da PI: 6.5326 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43 | 6e-14 | 15 | 63 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ienk tf+kRr+g+ KK +EL + C++++ ++++sstgk + + PGSC0003DMP400062952 15 KKIENKDSMFATFTKRREGLYKKSSELATECNVDIGIMMISSTGKPHSF 63 68******************************************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.563 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-18 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.01E-21 | 8 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-12 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.7E-18 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-12 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.6E-12 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MERKKTKGRQ KIPMKKIENK DSMFATFTKR REGLYKKSSE LATECNVDIG IMMISSTGKP 60 HSFFHPTVNA VISRFQNPDM QLGESTNLEA NAARNEVNQL KTRLEELDVI EDIAIAKKNS 120 YEQMEETRQK GWWESTEKLN PDEVFIFETW LNETSSNLHH RLNQLEIEAS SSMRYESFGV 180 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400062952 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015166885.1 | 1e-133 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | M1DM88 | 1e-131 | M1DM88_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400091277 | 1e-132 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA382 | 20 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-23 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400062952 |
Entrez Gene | 107061690 |
Publications ? help Back to Top | |||
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