PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400062939
Common NameLOC107060808
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 267aa    MW: 30508.3 Da    PI: 9.6838
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400062939genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-09103151454
                           HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                               +Er+RR+++ + +++Lr l+P+       +K s ++  e+ v+Y+k+L
  PGSC0003DMP400062939 103 RRRDVERQRRSDMAKLYQRLRLLIPSkY---LVGKRSISDHIEEIVDYVKDL 151
                           55789*********************77...9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.85299151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-9100168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-6101167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6103151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDDSEFDFGQ LDQLFNFLSS TPPPPPLLPP TTLQINQDSS FSLQKQNSNL VFTSTHHVPK  60
KKSIVTNYVT EKKPILNTNI NIIDDQVQDP SKEKKMVVEK KVRRRDVERQ RRSDMAKLYQ  120
RLRLLIPSKY LVGKRSISDH IEEIVDYVKD LKKDIEDLES KREKLKEMKN INCSSQLAPN  180
SSSMKLNDDD EDKIIVKSCN EGVEISIKGG VSLSKVLKVL MKEELIVNSC VSSTINQRLI  240
HIIQTKVNTR GDIDLALLRS KLMRLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400062939
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-151HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164607.10.0PREDICTED: transcription factor bHLH120-like
TrEMBLM1DM760.0M1DM76_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000912640.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128311118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.17e-23bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]