PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400062598 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | WRKY | ||||||||
Protein Properties | Length: 312aa MW: 35670.8 Da PI: 9.0581 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.8 | 2.3e-28 | 160 | 218 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D + WrKYGqK++k+s+fpr+YY+C+++ C++kkk+e+s +d++++ + Y+geHnh+ PGSC0003DMP400062598 160 NDIWIWRKYGQKHIKDSPFPRNYYKCSTSkLCKAKKKIEKSPKDENIFLVSYSGEHNHD 218 8*************************99879***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-26 | 153 | 220 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.898 | 154 | 220 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-23 | 155 | 220 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.9E-30 | 159 | 219 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-22 | 160 | 218 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MSNDLKETPV NDPEHLYLHH KTMQGSTAFI WVIFHRIALL DKPEVSFWVT RDFPTAHQEK 60 PDDQVMMMNQ NGNQQLYLHP IQPAQFIQQS SFPPSPTTVV CVPPTTTTPK EWVDLQQLDI 120 GANIYPNFTF SMKTPLIQTT TRKNQSIRIT YELLQEELTN DIWIWRKYGQ KHIKDSPFPR 180 NYYKCSTSKL CKAKKKIEKS PKDENIFLVS YSGEHNHDPP TNRSNLDSCN SSFKFKLPKG 240 INIVPKTSTL NALSSSSKRV RRSRVVASPI IATMPPLEIG NKNKMIVAAV EDKGDSKEEV 300 DMNEDILMGF F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-16 | 157 | 220 | 12 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400062598 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-113 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015159298.1 | 0.0 | PREDICTED: probable WRKY transcription factor 27 | ||||
TrEMBL | M1DLH9 | 0.0 | M1DLH9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400090923 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3668 | 13 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 4e-30 | WRKY DNA-binding protein 27 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400062598 |
Publications ? help Back to Top | |||
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