PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400062271
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 522aa    MW: 59417.7 Da    PI: 4.3588
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400062271genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.68.5e-2261403127
                   NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvka..eekew..yfFskrdkkyatgkrknratk.. 79 
                            GfrF+P+++el+  yL + +++k+l+ + +i+e+d+yk ePw+  +         +  +++++  yf s+r+kk++t++r  r++   
  PGSC0003DMP400062271   6 EGFRFRPENSELL-TYLLRFIAEKDLHDDGFITECDVYKQEPWRTYSrgchcgG--GddGDTSIfrYFISPRHKKKKTNDRFCRVVGkn 91 
                           6************.99*********999899*************9733564432..1324444467******************75534 PP

                   NAM  80 sgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                            g+Wk++ k k v+sk  k+  +glkk+L + + +   +   +W+m+ey 
  PGSC0003DMP400062271  92 LGTWKQQDKGKMVVSKhnKSLSMGLKKSLYY-DTKMCCPDDGKWLMKEYV 140
                           79*************95444459*****965.58888899*********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.2154165IPR003441NAC domain
PfamPF023651.4E-136140IPR003441NAC domain
SuperFamilySSF1019411.44E-197165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MEFEEEGFRF RPENSELLTY LLRFIAEKDL HDDGFITECD VYKQEPWRTY SRGCHCGGGD  60
DGDTSIFRYF ISPRHKKKKT NDRFCRVVGK NLGTWKQQDK GKMVVSKHNK SLSMGLKKSL  120
YYDTKMCCPD DGKWLMKEYV FCEAILRKFE NSNFKDYCIC AIKTKPEKNS ASCSRSSNMS  180
TTDEQKVDTK VISGVNSVVP RMDQECKEVT PINIVEPMVQ IQEASSGEEK IKELIENDDP  240
EITLMRNEDY GMINHPINVV ENPAMEVDDV EVQIQEAAGE WNGVLEFENT MPENNLPKQP  300
AHLQQDCPFG FNEDRIASFV GLPSGCGNSA IRNNQVQIQE APGEENGQLE LNTFSQIQQP  360
MIPDFANVKS NITIPEIYDT LAEYMGVDVL MNPNNELLIH PFDFSKHQVQ ITQEAAGEEN  420
GLLGKNMSPF SKVQEFVMPE NNVPEMFDTG DTLLEINQTP QEESETLCET EESSFVADLT  480
EALLDHEPLK DRWDAIRESK STLLLDQQSW QSKAHLQDML L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400062271
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-126HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025887134.10.0NAC domain containing protein 52-like
TrEMBLM1DKR30.0M1DKR3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000905960.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1427357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.14e-09NAC domain containing protein 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]