PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400062169 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 209aa MW: 24508.6 Da PI: 6.3681 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 50.9 | 5e-16 | 6 | 110 | 25 | 128 |
NAM 25 gkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy.WkatgkdkevlskkgelvglkktLvfykg 111 g ++e + i+ +d+y eP +L + +++++ yfF++ ++k+ +gk+ nr+t g Wk ++ke+l+k+++ +g kkt+ f ++ PGSC0003DMP400062169 6 GMPIEY-HDIPYIDLYGNkEPAELF-QNSGNNHVNYFFTQLKRKTIKGKNFNRSTVGGSkWKGRDNSKEILDKERSRIGYKKTFRFDEE 92 555556.4499999996549****6.333444566******************7765544***************************76 PP NAM 112 .rapkgektdWvmheyrl 128 ++++ e+ W+++ey l PGSC0003DMP400062169 93 sSSQDKESVYWIVKEYCL 110 3666667889******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 18.84 | 1 | 137 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.66E-14 | 2 | 136 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.9E-6 | 25 | 110 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MKFIRGMPIE YHDIPYIDLY GNKEPAELFQ NSGNNHVNYF FTQLKRKTIK GKNFNRSTVG 60 GSKWKGRDNS KEILDKERSR IGYKKTFRFD EESSSQDKES VYWIVKEYCL DKTTMDVLRE 120 RGEIRHEDSV VCFITKKVNL GKNHQDISIT TENIVPDCVS NSLRDRDGWL YAAKIWQLPS 180 LDEPFKVLTD EELDYFDTPD PEYPHAYI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400062169 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015170300.1 | 1e-155 | PREDICTED: uncharacterized protein LOC107063224 | ||||
TrEMBL | M1DKI3 | 1e-154 | M1DKI3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400090494 | 1e-154 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3381 | 10 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46590.1 | 1e-08 | NAC domain containing protein 96 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400062169 |
Publications ? help Back to Top | |||
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