PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400062002

Common Name

LOC102580381

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NAC

Protein Properties

Length: 285aa MW: 32954.4 Da PI: 8.033

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400062002	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.7	3.2e-51	21	147	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 pGfrFhPtdeelv +yL++kve+++l e ik++diyk+ePwdLpk+ + +ekewyfF+kr +ky+++ r+nr+t g+Wkatg dk PGSC0003DMP400062002 21 LPGFRFHPTDEELVGFYLRRKVEKRPLINIELIKQIDIYKYEPWDLPKSSNMGEKEWYFFCKRGRKYRNSVRPNRVTGCGFWKATGIDK 109 59**********************655599***********9888999******************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++++e +glkk+Lv+y+g+a kg+ktdW+mhe+rl PGSC0003DMP400062002 110 PIYNSTHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 147 **********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-53	20	178	IPR003441	NAC domain
PROSITE profile	PS51005	52.635	20	178	IPR003441	NAC domain
Pfam	PF02365	5.5E-26	22	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MEVKSKMKYY TREEDEDEMA LPGFRFHPTD EELVGFYLRR KVEKRPLINI ELIKQIDIYK 60 YEPWDLPKSS NMGEKEWYFF CKRGRKYRNS VRPNRVTGCG FWKATGIDKP IYNSTHECIG 120 LKKSLVYYRG SAGKGTKTDW MMHEFRLPAE NDKSTKHIEA KTIAQEAEVW TLCRIIKRNK 180 CTVAAEWRIA AAAAKRNPVV DSETCSADSS DYIISFGTAP TDIVHQDMMT SSTNNSNNQQ 240 LLRSSSSILC TTQQPSSDMN FELLLKNNVD YWDELTSILD LDRY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-48	22	179	19	166	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-48	22	179	19	166	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-48	22	179	19	166	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-48	22	179	19	166	NO APICAL MERISTEM PROTEIN
3swm_A	6e-48	22	179	22	169	NAC domain-containing protein 19
3swm_B	6e-48	22	179	22	169	NAC domain-containing protein 19
3swm_C	6e-48	22	179	22	169	NAC domain-containing protein 19
3swm_D	6e-48	22	179	22	169	NAC domain-containing protein 19
3swp_A	6e-48	22	179	22	169	NAC domain-containing protein 19
3swp_B	6e-48	22	179	22	169	NAC domain-containing protein 19
3swp_C	6e-48	22	179	22	169	NAC domain-containing protein 19
3swp_D	6e-48	22	179	22	169	NAC domain-containing protein 19
4dul_A	5e-48	22	179	19	166	NAC domain-containing protein 19
4dul_B	5e-48	22	179	19	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400062002

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015163599.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	1e-88	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	M1DK55	0.0	M1DK55_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400090327	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1697	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-88	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400062002
Entrez Gene	102580381

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]