PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400061403
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 306aa    MW: 34320.4 Da    PI: 5.4405
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400061403genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.42e-112312711055
                           HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           r+RR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  PGSC0003DMP400061403 231 RKRRERINERLKTLQSLIPNG-----TKVDISTMLEEAVQYVKFLQ 271
                           9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.688221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-15221288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-13226281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-12227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-12230275No hitNo description
PfamPF000108.4E-9231271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEHVASMFEG DWSSLSGMCF TEEADFMAQL LGNCSFPNDS NNYGVSSGYW NIGHESNIGS  60
SGGREHSGFL FPPPSHESYY SSYSRPILMR NDSSITTERG LMDTNNPIEA DEYFVNNMEF  120
DGNMAEPLLD GKGLQLGRID YERFPEDHSP TESSKKRARL HGHVPKNKRS TKLQTDVKTG  180
EMDGKNKAVL QRQNSMISCC SEDESNVSLE LTQKSRASRG SATDPQSLYA RKRRERINER  240
LKTLQSLIPN GTKVDISTML EEAVQYVKFL QLQIKLLSSE DLWMYAPIAY NGMDLGLDLR  300
IGIPK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400061403
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755221e-167HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248915.10.0transcription factor bHLH139-like
TrEMBLM1DIT40.0M1DIT4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000897280.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-63bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]