PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400060971 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 172aa MW: 19828.3 Da PI: 4.8633 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 49.8 | 1.1e-15 | 9 | 95 | 41 | 128 |
NAM 41 kvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 + ePw++ + +++ yf ++++kk+++ kr r++ +g+Wk +gk kev+++kg+l+g k L + g +++k ++ +W+m ey+l PGSC0003DMP400060971 9 ENEPWQIFEG--TNNYTHYFITPQKKKNSKWKRVARTVGNGTWKPQGKGKEVFDNKGRLMGYMKKLKYTYGkSDNKNVNGEWLMTEYSL 95 469****622..2334668889999999999*************************************8663677889*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.035 | 1 | 118 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.96E-20 | 10 | 118 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-7 | 11 | 95 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MEVVNLYAEN EPWQIFEGTN NYTHYFITPQ KKKNSKWKRV ARTVGNGTWK PQGKGKEVFD 60 NKGRLMGYMK KLKYTYGKSD NKNVNGEWLM TEYSLYDGYL GAREIKNRGY VICKIKKKGK 120 STIDENMNDV EELIDSSLQL EDDIVVEEDD VGDEVLAIMD KEDDGDRNVE C* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400060971 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006348977.1 | 1e-122 | PREDICTED: NAC domain-containing protein 68-like | ||||
TrEMBL | M1DHV8 | 1e-121 | M1DHV8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400089296 | 1e-122 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1024 | 13 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01540.1 | 3e-12 | NAC with transmembrane motif1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400060971 |
Publications ? help Back to Top | |||
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