PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G01540.1 | ||||||||
Common Name | ANAC068, F11O4.4, NAC68, NTL12, NTM1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 473aa MW: 53598.6 Da PI: 6.0974 | ||||||||
Description | NAC with transmembrane motif1 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 126 | 3e-39 | 6 | 136 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykveP.wdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 G+rF+Pt ee++++yLk+k+ gk ++e+i+e++i++++P +dLpk ++++e+ ewyfFs+ + +++++ + +r+t sg+Wk tg d+e+ +k AT4G01540.1 6 IGYRFSPTGEEVINHYLKNKLLGKYWLVDEAISEINILSHKPsKDLPKlaRIQSEDLEWYFFSPIEYTNPNKMKMKRTTGSGFWKPTGVDREIRDKrg 103 69***********************999999***********558995458888888**************************************977 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g ++g+kktLv+++g++p+g++t Wvmhey++ AT4G01540.1 104 NGVVIGIKKTLVYHEGKSPHGVRTPWVMHEYHI 136 7888***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-44 | 4 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.019 | 4 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.5E-22 | 7 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0031965 | Cellular Component | nuclear membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MMKGLIGYRF SPTGEEVINH YLKNKLLGKY WLVDEAISEI NILSHKPSKD LPKLARIQSE 60 DLEWYFFSPI EYTNPNKMKM KRTTGSGFWK PTGVDREIRD KRGNGVVIGI KKTLVYHEGK 120 SPHGVRTPWV MHEYHITCLP HHKRKYVVCQ VKYKGEAAEI SYEPSPSLVS DSHTVIAITG 180 EPEPELQVEQ PGKENLLGMS VDDLIEPMNQ QEEPQGPHLA PNDDEFIRGL RHVDRGTVEY 240 LFANEENMDG LSMNDLRIPM IVQQEDLSEW EGFNADTFFS DNNNNYNLNV HHQLTPYGDG 300 YLNAFSGYNE GNPPDHELVM QENRNDHMPR KPVTGTIDYS SDSGSDAGSI STTSYQGTSS 360 PNISVGSSSR HLSSCSSTDS CKDLQTCTDP SIISREIREL TQEVKQEIPR AVDAPMNNES 420 SLVKTEKKGL FIVEDAMERN RKKPRFIYLM KMIIGNIISV LLPVKRLIPV KKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-25 | 7 | 136 | 18 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 438 | 444 | RNRKKPR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145339891 | 0.0 | ||||
Expression Atlas | AT4G01540 | - | ||||
AtGenExpress | AT4G01540 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a membrane-bound NAC (for NAM, ATAF1/2, CUC2) transcription factor, designated NTM1 (for NAC with transmembrane motif1). NTM1 regulates cell division in Arabidopsis. | |||||
UniProt | Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) mediated by calpain or its functional homolog. Regulates cytokinin signaling during cell division. {ECO:0000269|PubMed:17098812}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00425 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G01540.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Stabilized by cytokinins. {ECO:0000269|PubMed:17098812}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Regulation -- ATRM (Manually Curated Target Genes) ? help Back to Top | ||||||
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Source | Target Gene (A: Activate/R: Repress) | |||||
ATRM | AT1G49620(A), AT4G34160(A) |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G01540 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493671 | 0.0 | AB493671.1 Arabidopsis thaliana At4g01540 mRNA for hypothetical protein, partial cds, clone: RAAt4g01540. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_192063.2 | 0.0 | NAC with transmembrane motif1 | ||||
Swissprot | A8MQY1 | 0.0 | NAC68_ARATH; NAC domain-containing protein 68 | ||||
TrEMBL | A0A178V4Y8 | 0.0 | A0A178V4Y8_ARATH; NTM1 | ||||
STRING | AT4G01540.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1982 | 19 | 71 |
Link Out ? help Back to Top | |
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Phytozome | AT4G01540.1 |
Entrez Gene | 828149 |
iHOP | AT4G01540 |
wikigenes | AT4G01540 |