PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400060875 | ||||||||
Common Name | LOC107060314 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | LBD | ||||||||
Protein Properties | Length: 124aa MW: 14537.7 Da PI: 8.8029 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127 | 8.6e-40 | 5 | 106 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk++rrkC+++Cvlapyfpa+qpkkf+n+h+lFG++n++k+l++l++e+ ++dam+s+++e+++r + PvyG+v+ i+ l+qql+ PGSC0003DMP400060875 5 SCAACKYQRRKCTSKCVLAPYFPANQPKKFQNAHRLFGVRNMVKILDELKDEDqKSDAMKSIIFESDMREKFPVYGCVECISYLRQQLQ 93 6************************************************666549********************************** PP DUF260 89 qlkaelallkeel 101 + +el+ ++++l PGSC0003DMP400060875 94 ITLQELQDVQSQL 106 *******999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.452 | 4 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.2E-38 | 5 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MSRVSCAACK YQRRKCTSKC VLAPYFPANQ PKKFQNAHRL FGVRNMVKIL DELKDEDQKS 60 DAMKSIIFES DMREKFPVYG CVECISYLRQ QLQITLQELQ DVQSQLEFYR QQHPTATYPN 120 FDR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-30 | 2 | 109 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-30 | 2 | 109 | 8 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400060875 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-169 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015163531.1 | 3e-88 | PREDICTED: LOB domain-containing protein 27 | ||||
Swissprot | Q9STS6 | 5e-37 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | M1DHN4 | 7e-87 | M1DHN4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400089200 | 1e-87 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 2e-39 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400060875 |
Entrez Gene | 107060314 |
Publications ? help Back to Top | |||
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