PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400060680 | ||||||||
Common Name | LOC102592766 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 213aa MW: 24095.8 Da PI: 6.501 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.3 | 9.6e-07 | 51 | 75 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++e+C f r GtC+yG++C+ H+ PGSC0003DMP400060680 51 RQEICGQFKRWGTCPYGEKCCHLHS 75 689******************9997 PP | |||||||
2 | zf-CCCH | 21.5 | 4e-07 | 109 | 134 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + r tC yG++CkFaHg+ PGSC0003DMP400060680 109 KTKFCYQWERKNTCFYGANCKFAHGE 134 5666********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 9.73E-7 | 49 | 79 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.023 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.399 | 50 | 77 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-4 | 51 | 75 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-7 | 53 | 78 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-9 | 105 | 138 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-12 | 106 | 139 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.117 | 107 | 135 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 107 | 134 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.1E-5 | 109 | 134 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MSRRDNDLEI SGKRNEYSAN AECESLKKPM EENSRMAQEG NIPIVPTIHD RQEICGQFKR 60 WGTCPYGEKC CHLHSRDEGE PRESSATIIV NDSQGIGQPK MPVDCTKLKT KFCYQWERKN 120 TCFYGANCKF AHGEAEMRSL DSSNPPESWS SVDISSLTRN VPATNVESNE IRTIAQAKCR 180 SKLNDIKRNS RIYADWIESL QPSPESPDTK EN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400060680 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU124742 | 1e-159 | EU124742.1 Solanum lycopersicum chromosome 3 clone C03HBa0323D22, complete sequence. | |||
GenBank | HG975442 | 1e-159 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. | |||
GenBank | HG975515 | 1e-159 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006364194.2 | 1e-158 | PREDICTED: zinc finger CCCH domain-containing protein 39-like | ||||
TrEMBL | M1DH83 | 1e-157 | M1DH83_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400089005 | 1e-158 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13026 | 13 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 1e-12 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400060680 |
Entrez Gene | 102592766 |
Publications ? help Back to Top | |||
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