PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400060076
Common NameLOC102604143
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 374aa    MW: 41270 Da    PI: 9.8936
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400060076genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.52.6e-1668155186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                           +W+++ + +Liea  e+  +l+rg+lk+++W++v++ + r++ ++++pk   qCk++++ ++k+yk +k     +  +  s++p+fd+l
  PGSC0003DMP400060076  68 CWSEEATAVLIEAWGERYMELSRGNLKQKHWKDVADIVcRQEDYRKTPKtdiQCKNRIDTVKKKYKLEKSKIAAG--QGPSKWPFFDKL 154
                           7**********************************876688888887754449*****************99997..56668******9 PP

              trihelix  86 e 86 
                           +
  PGSC0003DMP400060076 155 D 155
                           7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-2566156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0048831Biological Processregulation of shoot system development
GO:0005730Cellular Componentnucleolus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MENDEETQSH QSGGSGSPES PRSNGRITVT VASAPPQNTL TLALPIQQSR PAGASGGGGS  60
GGGGREDCWS EEATAVLIEA WGERYMELSR GNLKQKHWKD VADIVCRQED YRKTPKTDIQ  120
CKNRIDTVKK KYKLEKSKIA AGQGPSKWPF FDKLDMLIGP TAKINPTVAA GPSNLYSGNQ  180
HVPMGIPMGV RSLPQLRQHQ QLQKQKQPSR KRPHMDSDTS ESESEPDLSP ASTDSFPPGT  240
FQKKRPRFQK EMLNSSALRQ GGIGIGEASG KEGGNKNWGN SVRELTQAIL KFGEAYEQTE  300
SAKLQQMVEM EKQRMKFAKE MELQRMQFFM NTQLEISQLK HRRSGNSNHH SNNHAAATSN  360
HNNNNNNNSD SSI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400060076
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342943.10.0PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG81e-103ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLM1DFW40.0M1DFW4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000884010.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103321823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.13e-63sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]