PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400060075
Common NameLOC102594224
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 526aa    MW: 59668.8 Da    PI: 6.0382
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400060075genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.21.7e-901545232374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalkl.fsev 87 
                            + Ll++Ae vs+++  +a+++L++ + l s++g+p+qR+++yf++AL +r+ r++ +++ ++ +++++ ++  ++++++a  + +++ 
  PGSC0003DMP400060075 154 AQILLTAAEKVSDQQYDRARKFLSQCQLLTSNTGNPVQRAVFYFAQALGERIDRETGKIMPKICTETDELNSicVASRFHASYVaLHQE 242
                           689***************************************************8888887776666665557855555554445**** PP

                  GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                            P+ ++ h+t  qaIle+v+++ +vH iDf i  G+QW++L+qa a+R+ ++  +++iT+++s   ++ke++ +tg+ L++fA++l+ p
  PGSC0003DMP400060075 243 VPFTQIVHFTGIQAILESVATKPKVHLIDFLIRTGVQWASLIQAAAERKdNPIEHMKITVIES---VNKERVIATGKSLESFANSLNFP 328
                           ************************************************955566*********...78********************* PP

                  GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                           f+f+++   + ++l+ +++++kp+E ++++ ++ l  +     +++++ ++ +++v++l+P ++vv+e ea++ns+ F++rf+++l yy
  PGSC0003DMP400060075 329 FSFKIIFLPDRNQLTEDHFDIKPDEGVVIHAAFFLRAMI----CIPNCLETAMRVVRRLQPSLMVVSEVEANLNSPLFVNRFIDSLFYY 413
                           *****9999************************999998....88888888************************************** PP

                  GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352
                           salfd+le  + r++++r+++E    g  i+n+v +eg+er+ r  +l  Wr+ ++++G+++v+ls++   qa+l++++++     +v+
  PGSC0003DMP400060075 414 SALFDCLEDVMKRDDQHRMTLEVS-YGGGIRNIVGNEGEERVIRSVNLDVWRSFFRRFGMEEVKLSNTCLYQANLIIQQFAcRSSCSVD 501
                           **********************99.899*****************************************************9888**** PP

                  GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                            + gs++  Wk+ p++s+SaW+
  PGSC0003DMP400060075 502 VNGGSFMVSWKGTPIYSTSAWK 523
                           *********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.679127502IPR005202Transcription factor GRAS
PfamPF035145.8E-88154523IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MEDSTDIQNF CANYGFHQEY AVNQQLQEMN KQEEEMNVHA AHYAGELSQG KLKLSDLETG  60
SDVDEVPFLS LAPFELLRNN PRRRKNTEGV KVRDVNDGAN VHQKLSATQI MRLAGERFIQ  120
FSSNKFININ NLLHPYGSAF SDLSPEDNQD VELAQILLTA AEKVSDQQYD RARKFLSQCQ  180
LLTSNTGNPV QRAVFYFAQA LGERIDRETG KIMPKICTET DELNSICVAS RFHASYVALH  240
QEVPFTQIVH FTGIQAILES VATKPKVHLI DFLIRTGVQW ASLIQAAAER KDNPIEHMKI  300
TVIESVNKER VIATGKSLES FANSLNFPFS FKIIFLPDRN QLTEDHFDIK PDEGVVIHAA  360
FFLRAMICIP NCLETAMRVV RRLQPSLMVV SEVEANLNSP LFVNRFIDSL FYYSALFDCL  420
EDVMKRDDQH RMTLEVSYGG GIRNIVGNEG EERVIRSVNL DVWRSFFRRF GMEEVKLSNT  480
CLYQANLIIQ QFACRSSCSV DVNGGSFMVS WKGTPIYSTS AWKFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-4617652326375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18084PRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400060075
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2389180.0AC238918.11 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-210f9 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349253.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLM1DFW30.0M1DFW3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000884000.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139101114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-56RGA-like 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]