PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400060033 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 217aa MW: 24699 Da PI: 4.4191 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 60.2 | 4.1e-19 | 58 | 105 | 4 | 52 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 ++Wt++LH+rF+++v+qL G+ + Pk+i+e+m+++gLt+ +v+SHLQ PGSC0003DMP400060033 58 REWTEDLHARFMQVVHQL-GEGRCFPKEIVEVMSLPGLTRMQVASHLQE 105 78****************.9****************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.17E-14 | 53 | 107 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.6E-18 | 54 | 105 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.0E-17 | 56 | 106 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.5E-6 | 59 | 104 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MSYTKEQSNN IHEAENDVEL SEIYMLQRKR DTKGMKKNNE GERQNNVIDK VVTRKEYREW 60 TEDLHARFMQ VVHQLGEGRC FPKEIVEVMS LPGLTRMQVA SHLQETNTNA NSQQYVGEPI 120 MSGPRNIVVA SHENYVVGSN YNEKENSDAY LNFNNMDYLF QNLGPSGANL PNEQGNEFDQ 180 VYSDNQNLGP PSANLPNEHD SEFDQVYSDD QVSASI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400060033 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 2e-31 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015165596.1 | 7e-51 | PREDICTED: putative two-component response regulator ARR13 | ||||
TrEMBL | M1DFT1 | 1e-159 | M1DFT1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400088358 | 1e-160 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA813 | 23 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16857.2 | 2e-12 | response regulator 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400060033 |
Publications ? help Back to Top | |||
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