PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400059571
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 284aa    MW: 32396.3 Da    PI: 4.8807
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400059571genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.73.7e-171697890
                          -HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                    B3  8 sdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                           d  +s+ +++p+kfa++h   + + +s+ l +ed  g+++ +++ ++++++ y+l++GW +F ++++L++gDf+ F+    ++ 
  PGSC0003DMP400059571 16 IDKYSSHSVSIPNKFAQQHlpPLASGKSMILEFEDFGGNKFMMEVVHSNYGDYYYLRTGWDRFQNQHKLESGDFIYFSK---KND 97
                          57778899*************7777899*****************99******************************92...333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.5169108IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-1610100IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-141696IPR003340B3 DNA binding domain
CDDcd100177.56E-141798No hitNo description
Gene3DG3DSA:2.40.330.101.1E-142099IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEDEEVDENN SQVVVIDKYS SHSVSIPNKF AQQHLPPLAS GKSMILEFED FGGNKFMMEV  60
VHSNYGDYYY LRTGWDRFQN QHKLESGDFI YFSKKNDSYL IYSCKTPKPE ELDLQLPNES  120
IERVQVLVKN LCAKDPKCLR LSKKEVEGNL DQNLILQVGE EIILPLHDPI QKKSFTVQLL  180
HADQEEYHIR GREWEEYVAQ HNLFIFDETT IFVNKVILDP TAEVQLVNIS YHYEITYQTR  240
ATNQPQKKPK LLGTTAETSS APASTAVDNS SAPASTTVDN KNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400059571
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027767734.11e-174uncharacterized protein LOC114074008
RefseqXP_027767827.11e-174uncharacterized protein LOC114074096
TrEMBLM1DES80.0M1DES8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000878960.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1705534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.13e-09ethylene response DNA binding factor 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]