PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058818
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 334aa    MW: 36913.8 Da    PI: 5.0904
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058818genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.1e-102562961055
                           HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  PGSC0003DMP400058818 256 RKRRERINERLRILQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 296
                           9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-14245311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-12251305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.12E-12255300No hitNo description
PfamPF000105.8E-8256296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEPVVAMSEG EWSSLSGTCS TEEANFMAQL FGTCPNEQLP SSGLPIFWTN HESNIGGTSE  60
VSIFSSQDTN SSIYHFSTST NNFQPMLLRN NNTSMTMEQS SHLPPTNNLI EADAVEFLNK  120
QVSNDSIESG ENIMSESVLH GKSLQLGREY DQMQQSESSK KRSRSPVDHK NKRSVKPKKS  180
SVADDEETGN NNNNNNTVLH RQSSFSCCSE DESNVSSYDL YGLASSDNNS KGVSLPNGKS  240
RANRGSATDP QSLYARKRRE RINERLRILQ SLVPNGTKVD ISTMLEEAVQ YVKFLQLQIK  300
LLSSDDLWMY SPIAYNGMDI GLDLKIGIPN PKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058818
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346514.20.0PREDICTED: transcription factor bHLH84-like
TrEMBLM1DD900.0M1DD90_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000871430.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.16e-48bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]