PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400058560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 186aa MW: 21150.9 Da PI: 7.2829 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 41.9 | 3.1e-13 | 6 | 117 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlsk 95 +de+l+ yL + v+g ++ + + i+ v++y +P++L + +++++ + F++ +k +++gk+ nra+ g Wk++ ++v++k PGSC0003DMP400058560 6 EDEQLI-GYLINFVTGMPVGC-DEIRIVELYGNkKPSQLFDT--TTTNHHHVFTQLKKIKENGKNFNRAIVggGGSWKESYPMEHVVDK 90 599999.9**********999.6699999886549****633..3467899*****************76544889************* PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+kk + f + e+ W+m++y+l PGSC0003DMP400058560 91 NKSVIGIKKEFRFK--E----ENHVWIMKDYSL 117 *************8..2....2458******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 12.035 | 1 | 142 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-6 | 6 | 117 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.09E-14 | 7 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MGTNIEDEQL IGYLINFVTG MPVGCDEIRI VELYGNKKPS QLFDTTTTNH HHVFTQLKKI 60 KENGKNFNRA IVGGGGSWKE SYPMEHVVDK NKSVIGIKKE FRFKEENHVW IMKDYSLIDS 120 KLKGLSGRIQ HEGFVVCRIM RDSSSSQCQG SVKSFAQENH DECSVRQEVV HQETHPDVYT 180 QFNVS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400058560 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-117 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233985.1 | 6e-80 | NAC domain-containing protein 96-like | ||||
TrEMBL | M1DCP9 | 1e-135 | M1DCP9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400086885 | 1e-136 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3381 | 10 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 6e-08 | NAC domain containing protein 53 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400058560 |
Publications ? help Back to Top | |||
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