PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400058145 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 177aa MW: 20456.8 Da PI: 3.9748 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 32.6 | 2.3e-10 | 6 | 53 | 3 | 51 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkv 51 G+rFhP+d+el +L + +++k+l+ + +i+e+d+yk ePw+ ++kv PGSC0003DMP400058145 6 EGYRFHPRDSELF-TFLLRFIAEKDLSDNGFITECDVYKREPWKVDTKV 53 69**********9.899999*****999899*************98543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-8 | 7 | 50 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MEFEEEGYRF HPRDSELFTF LLRFIAEKDL SDNGFITECD VYKREPWKVD TKVISGVNSV 60 VPRLDHEYKA VTPINIVEPM VQIQEASSGE EIIKEQFEND DPEITCMWNE DYGMNNHPIN 120 VVENPVMEVD DVEVQIQEAV GEESGVLEFE NMLYSRCFDD PHKCRDLVPE CSRPDS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400058145 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 7e-95 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025887134.1 | 5e-23 | NAC domain containing protein 52-like | ||||
TrEMBL | M1DBU3 | 1e-126 | M1DBU3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400086470 | 1e-127 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14273 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17260.1 | 3e-06 | NAC domain containing protein 86 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400058145 |
Publications ? help Back to Top | |||
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