PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400057504 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 186aa MW: 21547.7 Da PI: 10.6864 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.5 | 1.5e-13 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+ll +++k +G g W++ +++ g+ R++k+c++rw +yl PGSC0003DMP400057504 14 KGSWTKKEDLLLTEYIKDFGEGtGWRSLPKKAGLLRCGKSCRLRWVNYL 62 799*******************99*********99************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T+eEd+l+v++ ++lG++ W++Ia ++ gRt++++k++w++ PGSC0003DMP400057504 68 RGTFTPEEDDLIVRLYTLLGSR-WSLIAGRIS-GRTDNDVKNYWNT 111 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.894 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.03E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-10 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-12 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-20 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.87E-6 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.836 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-14 | 68 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.61E-8 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-22 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MGRKPCCSKE GLKKGSWTKK EDLLLTEYIK DFGEGTGWRS LPKKAGLLRC GKSCRLRWVN 60 YLKPGLNRGT FTPEEDDLIV RLYTLLGSRW SLIAGRISGR TDNDVKNYWN TSLLKKLKGQ 120 GNEPQKHKSQ EKKRRRKKEK PNVSSQINQK NNDENKTRRR KKEKIVEKHN IEDEVATKIE 180 EQPHT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3zqc_A | 4e-25 | 14 | 141 | 2 | 127 | MYB3 |
3zqc_D | 4e-25 | 14 | 141 | 2 | 127 | MYB3 |
3zqc_G | 4e-25 | 14 | 141 | 2 | 127 | MYB3 |
3zqc_J | 4e-25 | 14 | 141 | 2 | 127 | MYB3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 135 | KHKSQEKKRRR |
2 | 131 | 136 | KKRRRK |
3 | 131 | 137 | KKRRRKK |
4 | 157 | 162 | RRRKKE |
5 | 158 | 163 | RRKKEK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400057504 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-164 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015084779.1 | 1e-109 | myb-related protein 308-like | ||||
Swissprot | Q38851 | 4e-57 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | M1DAD3 | 1e-131 | M1DAD3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400085829 | 1e-132 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 2e-58 | myb domain protein 6 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400057504 |
Publications ? help Back to Top | |||
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