PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400056095
Common NameLOC102589426
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HRT-like
Protein Properties Length: 368aa    MW: 40666.4 Da    PI: 10.5589
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400056095genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like54.32.3e-17118148131
              HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                           iCGv+l++GsvC r+P+ g+KRC+eHKGm++
  PGSC0003DMP400056095 118 ICGVALGHGSVCIRPPITGNKRCAEHKGMKV 148
                           8****************************97 PP
2HRT-like46.85.1e-15176205130
              HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                           iCG+il+ Gs+C r P + +KRC eHKG+R
  PGSC0003DMP400056095 176 ICGFILDSGSPCARIPFQRNKRCMEHKGRR 205
                           8****************************9 PP
3HRT-like55.59.6e-18265295131
              HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                           iCGv+l+dGs+C+rqP+ gRKRC  HKGmR+
  PGSC0003DMP400056095 265 ICGVHLNDGSFCTRQPAVGRKRCVGHKGMRV 295
                           8*****************************7 PP
4HRT-like45.81e-14337366130
              HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                           +CG++l++Gs+C+r+  +g+KRC++HKG++
  PGSC0003DMP400056095 337 TCGATLRNGSFCRRKSSEGNKRCWQHKGRK 366
                           7***************************97 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MNDNKDAERT EAQLLDKFDY AWNKGSNGVR RHNDVLRKLD GISRETRFPA FIRKLQLSLG  60
KRKGIRIKAC EPLLLENGSD VHDSFKSTNF LPQILKFGRS QPRIVSLNFG VNGDPNIICG  120
VALGHGSVCI RPPITGNKRC AEHKGMKVNS VKSKLIAEGN ESTRPCVSIG EENAPICGFI  180
LDSGSPCARI PFQRNKRCME HKGRRNQGSI SQPMTDKIGQ WTHNPILENR TSSSNDCQHI  240
LSSRAGTQDS QEFSSSLIHQ NYNVICGVHL NDGSFCTRQP AVGRKRCVGH KGMRVKEPIS  300
KQLGVEIPSL FAGPVAKISS GKKHLNINIP SVNYSPTCGA TLRNGSFCRR KSSEGNKRCW  360
QHKGRKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400056095
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345326.10.0PREDICTED: uncharacterized protein LOC102589426 isoform X1
TrEMBLM1D7660.0M1D766_SOLTU; Uncharacterized protein
TrEMBLM1D7670.0M1D767_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000838170.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.12e-43effector of transcription2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]